Structural changes enhance the activity of Chainia xylanase in low urea concentrations

Ameeta R. Kumar, Subray Hegde, K. N. Ganesh, M. I. Khan

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Low concentrations of urea (1.2 M) stimulated the activity of endo-xylanase from Chainia by 30%. Subtle structural changes in the monomeric protein were reflected in the secondary and tertiary structure of the enzyme as monitored by fluorescence and circular dichroism. Changes in λ max of emission, the fluorescence intensity and the Stern-Volmer quenching constants for acrylamide, measured in the presence of urea, indicated changes in the microenvironment of the Trp residues, suggesting alterations in tertiary structure. The ellipticity changes at 220 nm and Selcon analysis reflected changes in the content of β-sheet while both the near- and far-UV CD spectra indicated alterations in the secondary and tertiary structure of the protein in presence of urea. The dissociation constant values (K d) show very little change in the affinity of the enzyme for the substrate while the kcat values suggest enhanced turnover of the substrate in presence of urea. We suggest that low urea concentrations perturb the conformational state of xylanase leading to an open and a more flexible structure, resulting in enhanced catalytic rates.

Original languageEnglish (US)
Pages (from-to)164-171
Number of pages8
JournalBiochimica et Biophysica Acta - Proteins and Proteomics
Volume1645
Issue number2
DOIs
StatePublished - Feb 21 2003

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Urea
Fluorescence
Secondary Protein Structure
Flexible structures
Acrylamide
Substrates
Enzymes
Circular Dichroism
Tertiary Protein Structure
Quenching
Proteins

Keywords

  • Structure
  • Urea
  • Xylanase

ASJC Scopus subject areas

  • Biochemistry
  • Biophysics
  • Genetics

Cite this

Structural changes enhance the activity of Chainia xylanase in low urea concentrations. / Kumar, Ameeta R.; Hegde, Subray; Ganesh, K. N.; Khan, M. I.

In: Biochimica et Biophysica Acta - Proteins and Proteomics, Vol. 1645, No. 2, 21.02.2003, p. 164-171.

Research output: Contribution to journalArticle

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