• 29880 Citations
  • 92 h-Index
1975 …2020

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2020

Association of HPV35 with cervical carcinogenesis among women of African ancestry: Evidence of viral-host interaction with implications for disease intervention

Pinheiro, M., Gage, J. C., Clifford, G. M., Demarco, M., Cheung, L. C., Chen, Z., Yeager, M., Cullen, M., Boland, J. F., Chen, X., Raine-Bennett, T., Steinberg, M., Bass, S., Befano, B., Xiao, Y., Tenet, V., Walker, J., Zuna, R., Poitras, N. E., Gold, M. A. & 11 others, Dunn, T., Yu, K., Zhu, B., Burdett, L., Turan, S., Lorey, T., Castle, P. E., Wentzensen, N., Burk, R. D., Schiffman, M. & Mirabello, L., Jan 1 2020, (Accepted/In press) In : International Journal of Cancer.

Research output: Contribution to journalArticle

1 Scopus citations

A study of type-specific HPV natural history and implications for contemporary cervical cancer screening programs

Demarco, M., Hyun, N., Carter-Pokras, O., Raine-Bennett, T. R., Cheung, L., Chen, X., Hammer, A., Campos, N., Kinney, W., Gage, J. C., Befano, B., Perkins, R. B., He, X., Dallal, C., Chen, J., Poitras, N., Mayrand, M. H., Coutlee, F., Burk, R. D., Lorey, T. & 3 others, Castle, P. E., Wentzensen, N. & Schiffman, M., May 2020, In : EClinicalMedicine. 22, 100293.

Research output: Contribution to journalArticle

Open Access

Cervicovaginal microbiome and natural history of HPV in a longitudinal study

Costa Rica HPV Vaccine Trial (CVT) Group, 2020, In : PLoS pathogens. 16, 3, e1008376.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Effect of child abuse and neglect on risk behaviors in inner-city minority female adolescents and young adults

Diaz, A., Shankar, V., Nucci-Sack, A., Linares, L. O., Salandy, A., Strickler, H. D., Burk, R. D. & Schlecht, N. F., Mar 2020, In : Child Abuse and Neglect. 101, 104347.

Research output: Contribution to journalArticle

1 Scopus citations

Epidemiological evidence that common HPV types may be common because of their ability to evade immune surveillance: Results from the Women's Interagency HIV study

Castle, P. E., Burk, R. D., Massad, L. S., Eltoum, I. E., Hall, C. B., Hessol, N. A., Anastos, K., Xie, X., Minkoff, H., Xue, X., D'Souza, G., Flowers, L., Colie, C., Rahangdale, L., Fischl, M. A., Palefsky, J. M. & Strickler, H. D., Jun 15 2020, In : International Journal of Cancer. 146, 12, p. 3320-3328 9 p.

Research output: Contribution to journalArticle

HPV73 a nonvaccine type causes cervical cancer

Amaro-Filho, S. M., Gradissimo, A., Usyk, M., Moreira, F. C. B., de Almeida, L. M., Moreira, M. A. M. & Burk, R. D., Feb 1 2020, In : International Journal of Cancer. 146, 3, p. 731-738 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Mutations in the HPV16 genome induced by APOBEC3 are associated with viral clearance

Zhu, B., Xiao, Y., Yeager, M., Clifford, G., Wentzensen, N., Cullen, M., Boland, J. F., Bass, S., Steinberg, M. K., Raine-Bennett, T., Lee, D. H., Burk, R. D., Pinheiro, M., Song, L., Dean, M., Nelson, C. W., Burdett, L., Yu, K., Roberson, D., Lorey, T. & 6 others, Franceschi, S., Castle, P. E., Walker, J., Zuna, R., Schiffman, M. & Mirabello, L., Dec 1 2020, In : Nature communications. 11, 1, 886.

Research output: Contribution to journalArticle

Open Access

Staphylococcus aureus nasal carriage and microbiome composition among medical students from Colombia: A cross-sectional study

Geliebter, J., Reyes, N., Montes, O., Figueroa, S., Tiwari, R., Sollecito, C. C., Emmerich, R., Usyk, M. & Burk, R. D., Jan 1 2020, In : F1000Research. 9, 78.

Research output: Contribution to journalArticle

Open Access

The interaction between pubertal timing and childhood maltreatment on the risk of human papillomavirus infection among adolescent girls and young women

Niu, L., Hoyt, L. T., Salandy, A., Nucci-Sack, A., Shankar, V., Strickler, H., Burk, R. D., Schlecht, N. F. & Diaz, A., Sep 2020, In : Preventive Medicine. 138, 106126.

Research output: Contribution to journalArticle

Twelve-Year Trend in the Prevalence of High-Risk Human Papillomavirus Infection Among Rwandan Women Living With HIV

Murenzi, G., Kanyabwisha, F., Murangwa, A., Kubwimana, G., Mutesa, L., Burk, R. D., Anastos, K. & Castle, P. E., Jun 16 2020, In : The Journal of infectious diseases. 222, 1, p. 74-81 8 p.

Research output: Contribution to journalArticle

1 Scopus citations
2019

An Observational Study of Deep Learning and Automated Evaluation of Cervical Images for Cancer Screening

Hu, L., Bell, D., Antani, S., Xue, Z., Yu, K., Horning, M. P., Gachuhi, N., Wilson, B., Jaiswal, M. S., Befano, B., Long, L. R., Herrero, R., Einstein, M. H., Burk, R. D., Demarco, M., Gage, J. C., Rodriguez, A. C., Wentzensen, N. & Schiffman, M., Sep 1 2019, In : Journal of the National Cancer Institute. 111, 9, p. 923-932 10 p.

Research output: Contribution to journalArticle

Open Access
41 Scopus citations

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota

Rosenbaum, J., Usyk, M., Chen, Z., Zolnik, C. P., Jones, H. E., Waldron, L., Dowd, J. B., Thorpe, L. E. & Burk, R. D., Dec 1 2019, In : Scientific reports. 9, 1, 1531.

Research output: Contribution to journalArticle

6 Scopus citations

Fecal transplant modifies urine chemistry risk factors for urinary stone disease

Stern, J. M., Urban-Maldonado, M., Usyk, M., Granja, I., Schoenfeld, D., Davies, K., Agalliu, I., Asplin, J., Burk, R. D. & Suadicani, S. O., Feb 1 2019, In : Physiological Reports. 7, 4, e14012.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Genetic variants in CYP and GST genes, smoking and risk for head and neck cancers: A gene-environment interaction hospital-based case-control study among Canadian Caucasians

Thekkepurakkal, A. S., Nicolau, B., Burk, R. D., Franco, E. L. & Schlecht, N. F., Sep 1 2019, In : Carcinogenesis. 40, 9, p. 1061-1069 9 p.

Research output: Contribution to journalArticle

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

Kaplan, R. C., Wang, Z., Usyk, M., Sotres-Alvarez, D., Daviglus, M. L., Schneiderman, N., Talavera, G. A., Gellman, M. D., Thyagarajan, B., Moon, J. Y., Vázquez-Baeza, Y., McDonald, D., Williams-Nguyen, J. S., Wu, M. C., North, K. E., Shaffer, J., Sollecito, C. C., Qi, Q., Isasi, C. R., Wang, T. & 2 others, Knight, R. & Burk, R. D., Nov 1 2019, In : Genome biology. 20, 1, 219.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Non-human Primate Papillomaviruses Share Similar Evolutionary Histories and Niche Adaptation as the Human Counterparts

Chen, Z., Long, T., Wong, P. Y., Ho, W. C. S., Burk, R. D. & Chan, P. K. S., Sep 10 2019, In : Frontiers in Microbiology. 10, 2093.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Risk of Oral Human Papillomavirus Infection Among Sexually Active Female Adolescents Receiving the Quadrivalent Vaccine

Schlecht, N. F., Masika, M., Diaz, A., Nucci-Sack, A., Salandy, A., Pickering, S., Strickler, H. D., Shankar, V. & Burk, R. D., Oct 2 2019, In : JAMA Network Open. 2, 10, p. e1914031

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Sociodemographic variation in the oral microbiome

Renson, A., Jones, H. E., Beghini, F., Segata, N., Zolnik, C. P., Usyk, M., Moody, T. U., Thorpe, L., Burk, R., Waldron, L. & Dowd, J. B., Jul 2019, In : Annals of Epidemiology. 35, p. 73-80.e2

Research output: Contribution to journalArticle

2 Scopus citations

The molecular biology and HPV drug responsiveness of cynomolgus macaque papillomaviruses support their use in the development of a relevant in vivo model for antiviral drug testing

Tombak, E. M., Männik, A., Burk, R. D., Le Grand, R., Ustav, E. & Ustav, M., Jan 2019, In : PloS one. 14, 1, e0211235.

Research output: Contribution to journalArticle

Open Access

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Beghini, F., Renson, A., Zolnik, C. P., Geistlinger, L., Usyk, M., Moody, T. U., Thorpe, L., Dowd, J. B., Burk, R., Segata, N., Jones, H. E. & Waldron, L., Jun 2019, In : Annals of Epidemiology. 34, p. 18-25.e3

Research output: Contribution to journalArticle

2 Scopus citations
2018

Association of an intact E2 gene with higher HPV viral load, higher viral oncogene expression, and improved clinical outcome in HPV16 positive head and neck squamous cell carcinoma

Anayannis, N. V., Schlecht, N. F., Ben-Dayan, M., Smith, R. V., Belbin, T. J., Ow, T. J., Blakaj, D. M., Burk, R. D., Leonard, S. M., Woodman, C. B., Parish, J. L. & Prystowsky, M. B., Feb 2018, In : PloS one. 13, 2, e0191581.

Research output: Contribution to journalArticle

6 Scopus citations

Association of oral microbiome with risk for incident head and neck squamous cell cancer

Hayes, R. B., Ahn, J., Fan, X., Peters, B. A., Ma, Y., Yang, L., Agalliu, I., Burk, R. D., Ganly, I., Purdue, M. P., Freedman, N. D., Gapstur, S. M. & Pei, Z., Mar 2018, In : JAMA Oncology. 4, 3, p. 358-365 8 p.

Research output: Contribution to journalArticle

29 Scopus citations

Classification and evolution of human papillomavirus genome variants: Alpha-5 (HPV26, 51, 69, 82), Alpha-6 (HPV30, 53, 56, 66), Alpha-11 (HPV34, 73), Alpha-13 (HPV54) and Alpha-3 (HPV61)

Chen, Z., Schiffman, M., Herrero, R., DeSalle, R., Anastos, K., Segondy, M., Sahasrabuddhe, V. V., Gravitt, P. E., Hsing, A. W., Chan, P. K. S. & Burk, R. D., Mar 1 2018, In : Virology. 516, p. 86-101 16 p.

Research output: Contribution to journalArticle

9 Scopus citations
27 Scopus citations

Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China

Long, T., Wong, P. Y., Ho, W. C. S., Burk, R. D., Chan, P. K. S. & Chen, Z., Dec 6 2018, In : Microbiology Resource Announcements. 7, 22, e01414-18.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Complete genome sequences of three novel Saimiri sciureus papillomavirus types isolated from the cervicovaginal region of squirrel monkeys

Chen, Z., Wood, C. E., Abee, C. R. & Burk, R. D., Jan 1 2018, In : Genome Announcements. 6, 1, e01400-17.

Research output: Contribution to journalArticle

2 Scopus citations

Diversity of macaque microbiota compared to the human counterparts

Chen, Z., Yeoh, Y. K., Hui, M., Wong, P. Y., Chan, M. C. W., Ip, M., Yu, J., Burk, R. D., Chan, F. K. L. & Chan, P. K. S., Dec 1 2018, In : Scientific reports. 8, 1, 15573.

Research output: Contribution to journalArticle

6 Scopus citations

Gut microbial-related choline metabolite trimethylamine-N-oxide is associated with progression of carotid artery atherosclerosis in HIV infection

Shan, Z., Clish, C. B., Hua, S., Scott, J. M., Hanna, D. B., Burk, R. D., Haberlen, S. A., Shah, S. J., Margolick, J. B., Sears, C. L., Post, W. S., Landay, A. L., Lazar, J. M., Hodis, H. N., Anastos, K., Kaplan, R. C. & Qi, Q., Jan 1 2018, In : Journal of Infectious Diseases. 218, 9, p. 1474-1479 6 p.

Research output: Contribution to journalArticle

12 Scopus citations

Gut microbiota and plasma metabolites associated with diabetes in women with, or at high risk for, HIV infection

Moon, J. Y., Zolnik, C. P., Wang, Z., Qiu, Y., Usyk, M., Wang, T., Kizer, J. R., Landay, A. L., Kurland, I. J., Anastos, K., Kaplan, R. C., Burk, R. D. & Qi, Q., Nov 2018, In : EBioMedicine. 37, p. 392-400 9 p.

Research output: Contribution to journalArticle

11 Scopus citations

Human papillomavirus DNA methylation as a biomarker for cervical precancer: Consistency across 12 genotypes and potential impact on management of hpv-positive women

Clarke, M. A., Gradissimo, A., Schiffman, M., Lam, J., Sollecito, C. C., Fetterman, B., Lorey, T., Poitras, N., Raine-Bennett, T. R., Castle, P. E., Wentzensen, N. & Burk, R. D., May 1 2018, In : Clinical Cancer Research. 24, 9, p. 2194-2202 9 p.

Research output: Contribution to journalArticle

18 Scopus citations

ICTV virus taxonomy profile: Papillomaviridae

ICTV Report Consortium, Aug 2018, In : Journal of General Virology. 99, 8, p. 989-990 2 p., 001105.

Research output: Contribution to journalArticle

35 Scopus citations

Methylation of high-risk human papillomavirus genomes are associated with cervical precancer in HIV-positive women

Gradissimo, A., Lam, J., Attonito, J. D., Palefsky, J., Massad, L. S., Xie, X., Eltoum, I. E., Rahangdale, L., Fischl, M. A., Anastos, K., Minkoff, H., Xue, X. N., D'Souza, G., Flowers, L. C., Colie, C., Shrestha, S., Hessol, N. A., Strickler, H. & Burk, R. D., Dec 1 2018, In : Cancer Epidemiology Biomarkers and Prevention. 27, 12, p. 1407-1415 9 p.

Research output: Contribution to journalArticle

Niche adaptation and viral transmission of human papillomaviruses from archaic hominins to modern humans

Chen, Z., DeSalle, R., Schiffman, M., Herrero, R., Wood, C. E., Ruiz, J. C., Clifford, G. M., Chan, P. K. S. & Burk, R. D., Nov 2018, In : PLoS pathogens. 14, 11, e1007352.

Research output: Contribution to journalArticle

14 Scopus citations

Oral alpha, beta, and gamma HPV types and risk of incident esophageal cancer

Agalliu, I., Chen, Z., Wang, T., Hayes, R. B., Freedman, N. D., Gapstur, S. M. & Burk, R. D., Oct 2018, In : Cancer Epidemiology Biomarkers and Prevention. 27, 10, p. 1168-1175 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Plasma tryptophan-kynurenine metabolites are altered in human immunodeficiency virus infection and associated with progression of carotid artery atherosclerosis

Qi, Q., Hua, S., Clish, C. B., Scott, J. M., Hanna, D. B., Wang, T., Haberlen, S. A., Shah, S. J., Glesby, M. J., Lazar, J. M., Burk, R. D., Hodis, H. N., Landay, A. L., Post, W. S., Anastos, K. & Kaplan, R. C., Jul 2 2018, In : Clinical Infectious Diseases. 67, 2, p. 235-242 8 p.

Research output: Contribution to journalArticle

18 Scopus citations

Racial differences in human papilloma virus types amongst United States women with HIV and cervical precancer

Keller, M. J., Burk, R. D., Massad, L. S., Eltoum, I. E., Hessol, N. A., Anastos, K., Xie, X., Minkoff, H., Xue, X., Reimers, L. L., Kuniholm, M. H., D'Souza, G., Colie, C., Aouizerat, B., Palefsky, J. M. & Strickler, H. D., Jan 1 2018, In : AIDS. 32, 18, p. 2821-2826 6 p.

Research output: Contribution to journalArticle

2 Scopus citations

T cell receptor repertoire among women who cleared and failed to clear cervical human papillomavirus infection: An exploratory proof-of-principle study

Lang Kuhs, K. A., Lin, S. W., Hua, X., Schiffman, M., Burk, R. D., Rodriguez, A. C., Herrero, R., Abnet, C. C., Freedman, N. D., Pinto, L. A., Hamm, D., Robins, H., Hildesheim, A., Shi, J. & Safaeian, M., Jan 2018, In : PloS one. 13, 1, e0178167.

Research output: Contribution to journalArticle

3 Scopus citations

The intersection of HPV epidemiology, genomics and mechanistic studies of HPV-mediated carcinogenesis

NCI HPV Workshop, Feb 13 2018, In : Viruses. 10, 2, 80.

Research output: Contribution to journalArticle

18 Scopus citations
2017

Ancient evolution and dispersion of human papillomavirus 58 variants

Chen, Z., Ho, W. C. S., Boon, S. S., Law, P. T. Y., Chan, M. C. W., DeSalle, R., Burk, R. D. & Chan, P. K. S., Nov 1 2017, In : Journal of virology. 91, 21, e01285-17.

Research output: Contribution to journalArticle

15 Scopus citations

Cervical cancer incidence after screening with HPV, cytology, and visual methods: 18-Year follow-up of the Guanacaste cohort

Rodríguez, A. C., Ávila, C., Herrero, R., Hildesheim, A., Sherman, M. E., Burk, R. D., Morales, J., Alfaro, M., Guillén, D., Trejos, M. E., Vargas, R. M., Torres, G. & Schiffman, M., Apr 15 2017, In : International Journal of Cancer. 140, 8, p. 1926-1934 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

HPV16 E7 Genetic Conservation Is Critical to Carcinogenesis

Mirabello, L., Yeager, M., Yu, K., Clifford, G. M., Xiao, Y., Zhu, B., Cullen, M., Boland, J. F., Wentzensen, N., Nelson, C. W., Raine-Bennett, T., Chen, Z., Bass, S., Song, L., Yang, Q., Steinberg, M., Burdett, L., Dean, M., Roberson, D., Mitchell, J. & 12 others, Lorey, T., Franceschi, S., Castle, P. E., Walker, J., Zuna, R., Kreimer, A. R., Beachler, D. C., Hildesheim, A., Gonzalez, P., Porras, C., Burk, R. D. & Schiffman, M., Sep 7 2017, In : Cell. 170, 6, p. 1164-1174.e6

Research output: Contribution to journalArticle

80 Scopus citations

Integrated genomic and molecular characterization of cervical cancer

The Cancer Genome Atlas Research Network, Mar 16 2017, In : Nature. 543, 7645, p. 378-384 7 p.

Research output: Contribution to journalArticle

374 Scopus citations

Lower airway microbiota and mycobiota in children with severe asthma

Goldman, D. L., Chen, Z., Viswanathan, S., Tyberg, M., Vicencio, A. & Burk, R. D., Jan 1 2017, (Accepted/In press) In : Journal of Allergy and Clinical Immunology.

Research output: Contribution to journalArticle

7 Scopus citations

Novel ITS1 fungal primers for characterization of the mycobiome

Usyk, M., Zolnik, C. P., Patel, H., Levi, M. H. & Burk, R. D., Nov 1 2017, In : mSphere. 2, 6, e00488-17.

Research output: Contribution to journalArticle

15 Scopus citations

Therapeutic Vaccine Against Primate Papillomavirus Infections of the Cervix

Ragonnaud, E., Andersson, A. M. C., Mariya, S., Pedersen, A. G., Burk, R. D., Folgori, A., Colloca, S., Cortese, R., Nicosia, A., Pamungkas, J., Iskandriati, D. & Holst, P. J., Jan 1 2017, In : Journal of Immunotherapy. 40, 2, p. 51-61 11 p.

Research output: Contribution to journalArticle

5 Scopus citations
2016

A polycomb-mediated epigenetic field defect precedes invasive cervical carcinoma

Wijetunga, N. A., Ben-Dayan, M., Tozour, J., Burk, R. D., Schlecht, N. F., Einstein, M. H. & Greally, J. M., Jan 1 2016, In : Oncotarget. 7, 38, p. 62133-62143 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Association of cervical precancer with human papillomavirus types other than 16 among HIV co-infected women

Stewart Massad, L., Xie, X., Burk, R. D., D'Souza, G., Darragh, T. M., Minkoff, H., Colie, C., Burian, P., Palefsky, J., Atrio, J. M. & Strickler, H., Mar 1 2016, In : American Journal of Obstetrics and Gynecology. 214, 3, p. 354.e1-354.e6

Research output: Contribution to journalArticle

21 Scopus citations

Association of High-Risk Human Papillomavirus with Genital Tract Mucosal Immune Factors in HIV-Infected Women

Buckley, N., Huber, A., Lo, Y., Castle, P. E., Kemal, K., Burk, R. D., Strickler, H. D., Einstein, M. H., Young, M., Anastos, K. & Herold, B. C., Feb 1 2016, In : American Journal of Reproductive Immunology. 75, 2, p. 146-154 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Association of serum cytokines with oral HPV clearance

Lam, J. O., Bream, J. H., Sugar, E. A., Coles, C. L., Weber, K. M., Burk, R. D., Wiley, D. J., Cranston, R. D., Reddy, S., Margolick, J. B., Strickler, H. D., Wentz, A., Jacobson, L., Guo, Y., Xiao, W., Gillison, M. L. & D'Souza, G., Jul 1 2016, In : Cytokine. 83, p. 85-91 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Associations of oral α-, β-, and γ-human papillomavirus types with risk of incident head and neck cancer

Agalliu, I., Gapstur, S., Chen, Z., Wang, T., Anderson, R. L., Teras, L., Kreimer, A. R., Hayes, R. B., Freedman, N. D. & Burk, R. D., May 1 2016, In : JAMA oncology. 2, 5, p. 599-606 8 p.

Research output: Contribution to journalArticle

66 Scopus citations