Find Research outputs

Search results

• Article

  Transcriptional regulator Leu3 of Saccharomyces cerevisiae: Separation of activator and repressor functions

  Sze, J. Y., Remboutsika, E. & Kohlhaw, G. B., Sep 1993, In: Molecular and cellular biology. 13, 9, p. 5702-5709 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  26 Scopus citations

• Transcriptional regulators CITED2 and PU.1 cooperate in maintaining hematopoietic stem cells

  Mattes, K., Geugien, M., Korthuis, P. M., Brouwers-Vos, A. Z., Fehrmann, R. S. N., Todorova, T. I., Steidl, U., Vellenga, E. & Schepers, H., May 2019, In: Experimental Hematology. 73, p. 38-49.e7

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Transcriptional repression of Stat6-dependent interleukin-4-induced genes by BCL-6: Specific regulation of Iε transcription and immunoglobulin E switching

  Harris, M. B., Chang, C. C., Berton, M. T., Danial, N. N., Zhang, J., Kuehner, D., Ye, B. H., Kvatyuk, M., Pandolfi, P. P., Cattoretti, G., Dalla-Favera, R. & Rothman, P. B., Oct 1999, In: Molecular and cellular biology. 19, 10, p. 7264-7275 12 p.

  Research output: Contribution to journal › Article › peer-review
  164 Scopus citations

• Transcriptional signature with differential expression of BCL6 target genes accurately identifies BCL6-dependent diffuse large B cell lymphomas

  Polo, J. M., Juszczynski, P., Monti, S., Cerchietti, L., Ye, K., Greally, J. M., Shipp, M. & Melnick, A., Feb 27 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 9, p. 3207-3212 6 p.

  Research output: Contribution to journal › Article › peer-review
  106 Scopus citations

• Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

  Ludwig, L. S., Lareau, C. A., Bao, E. L., Nandakumar, S. K., Muus, C., Ulirsch, J. C., Chowdhary, K., Buenrostro, J. D., Mohandas, N., An, X., Aryee, M. J., Regev, A. & Sankaran, V. G., Jun 11 2019, In: Cell Reports. 27, 11, p. 3228-3240.e7

  Research output: Contribution to journal › Article › peer-review

  Open Access
  61 Scopus citations

• Transcriptional targeting of adenoviral vector through the CXCR4 tumor-specific promoter

  Zhu, Z. B., Makhija, S. K., Lu, B., Wang, M., Kaliberova, L., Liu, B., Rivera, A. A., Nettelbeck, D. M., Mahasreshti, P. J., Leath, C. A., Yamaoto, M., Alvarez, R. D. & Curiel, D. T., Apr 2004, In: Gene Therapy. 11, 7, p. 645-648 4 p.

  Research output: Contribution to journal › Article › peer-review
  53 Scopus citations

• Transcriptional targeting of tumors with a novel tumor-specific survivin promoter

  Zhu, Z. B., Makhija, S. K., Lu, B., Wang, M., Kaliberova, L., Liu, B., Rivera, A. A., Nettelbeck, D. M., Mahasreshti, P. J., Leath, C. A., Barker, S., Yamaoto, M., Li, F., Alvarez, R. D. & Curiel, D. T., Apr 2004, In: Cancer gene therapy. 11, 4, p. 256-262 7 p.

  Research output: Contribution to journal › Article › peer-review
  83 Scopus citations

• Transcription cooperation by NFAT·C/EBP composite enhancer complex

  Yang, T. T. C. & Chow, C. W., May 2 2003, In: Journal of Biological Chemistry. 278, 18, p. 15874-15885 12 p.

  Research output: Contribution to journal › Article › peer-review
  49 Scopus citations

• Transcription elongation regulator 1 is a co-integrator of the cell fate determination factor Dachshund homolog

  Zhou, J., Liu, Y., Zhang, W., Popov, V. M., Wang, M., Pattabiraman, N., Suñé, C., Cvekl, A., Wu, K., Jiang, J., Wang, C. & Pestell, R. G., Dec 17 2010, In: Journal of Biological Chemistry. 285, 51, p. 40342-40350 9 p.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Transcription factor AP-2 is expressed in neural crest cell lineages during mouse embryogenesis

  Mitchell, P. J., Timmons, P. M., Hébert, J. M., Rigby, P. W. J. & Tjian, R., 1991, In: Genes and Development. 5, 1, p. 105-119 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  492 Scopus citations

• Transcription factor binding site identification in yeast: A comparison of high-density oligonucleotide and PCR-based microarray platforms

  Borneman, A. R., Zhang, Z. D., Rozowsky, J., Seringhaus, M. R., Gerstein, M. & Snyder, M., Oct 2007, In: Functional and Integrative Genomics. 7, 4, p. 335-345 11 p.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Transcription factor binding site identification using the self-organizing map

  Mahony, S., Hendrix, D., Golden, A., Smith, T. J. & Rokhsar, D. S., May 1 2005, In: Bioinformatics. 21, 9, p. 1807-1814 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  60 Scopus citations

• Transcription factor cooperativity in early adipogenic hotspots and super-enhancers

  Siersbæk, R., Rabiee, A., Nielsen, R., Sidoli, S., Traynor, S., Loft, A., Poulsen, L. L. C., Rogowska-Wrzesinska, A., Jensen, O. N. & Mandrup, S., Jun 12 2014, In: Cell Reports. 7, 5, p. 1443-1455 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  160 Scopus citations

• Transcription Factor EB Controls Metabolic Flexibility during Exercise

  Mansueto, G., Armani, A., Viscomi, C., D'Orsi, L., De Cegli, R., Polishchuk, E. V., Lamperti, C., Di Meo, I., Romanello, V., Marchet, S., Saha, P. K., Zong, H., Blaauw, B., Solagna, F., Tezze, C., Grumati, P., Bonaldo, P., Pessin, J. E., Zeviani, M., Sandri, M. & 1 others, Ballabio, A., Jan 10 2017, In: Cell metabolism. 25, 1, p. 182-196 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  163 Scopus citations

• Transcription factor GATA4 inhibits doxorubicin-induced autophagy and cardiomyocyte death

  Kobayashi, S., Volden, P., Timm, D., Mao, K., Xu, X. & Liang, Q., Jan 1 2010, In: Journal of Biological Chemistry. 285, 1, p. 793-804 12 p.

  Research output: Contribution to journal › Article › peer-review
  183 Scopus citations

• Transcription factor JunD, deprived of menin, switches from growth suppressor to growth promoter

  Agarwal, S. K., Novotny, E. A., Crabtree, J. S., Weitzman, J. B., Yaniv, M., Burns, A. L., Chandrasekharappa, S. C., Collins, F. S., Spiegel, A. M. & Marx, S. J., Sep 16 2003, In: Proceedings of the National Academy of Sciences of the United States of America. 100, 19, p. 10770-10775 6 p.

  Research output: Contribution to journal › Article › peer-review
  100 Scopus citations

• Transcription factor MEF2D is required for the maintenance of MLL-rearranged acute myeloid leukemia

  Zhao, L., Zhang, P., Galbo, P. M., Zhou, X., Aryal, S., Qiu, S., Zhang, H., Zhou, Y., Li, C., Zheng, D., Bhatia, R. & Lu, R., Nov 23 2021, In: Blood Advances. 5, 22, p. 4727-4740 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Transcription factor NFE2L2/NRF2 modulates chaperone-mediated autophagy through the regulation of LAMP2A

  Pajares, M., Rojo, A. I., Arias, E., Díaz-Carretero, A., Cuervo, A. M. & Cuadrado, A., Aug 3 2018, In: Autophagy. 14, 8, p. 1310-1322 13 p.

  Research output: Contribution to journal › Article › peer-review
  82 Scopus citations

• Transcription initiation by human RNA polymerase II visualized at single-molecule resolution

  Revyakin, A., Zhang, Z., Coleman, R. A., Li, Y., Inouye, C., Lucas, J. K., Park, S. R., Chu, S. & Tjian, R., Aug 1 2012, In: Genes and Development. 26, 15, p. 1691-1702 12 p.

  Research output: Contribution to journal › Article › peer-review
  64 Scopus citations

• Transcription map of Xq27: Candidates for several X-linked diseases

  Zucchi, I., Jones, J., Affer, M., Montagna, C., Redolfi, E., Susani, L., Vezzoni, P., Parvari, R., Schlessinger, D., Whyte, M. P. & Mumm, S., Apr 15 1999, In: Genomics. 57, 2, p. 209-218 10 p.

  Research output: Contribution to journal › Article › peer-review
  14 Scopus citations

• Transcription of adenovirus RNA in permissive and nonpermissive infections

  Farber, M. S. & Baum, S. G., 1978, In: Journal of virology. 27, 1, p. 136-148 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  13 Scopus citations

• Transcription of functionally related constitutive genes is not coordinated

  Gandhi, S. J., Zenklusen, D., Lionnet, T. & Singer, R. H., Jan 2011, In: Nature Structural and Molecular Biology. 18, 1, p. 27-35 9 p.

  Research output: Contribution to journal › Article › peer-review
  83 Scopus citations

• Transcription of G-Protein Coupled Receptors in Corporeal Smooth Muscle is Regulated by the Endogenous Neutral Endopeptidase Inhibitor Sialorphin

  Tong, Y., Tiplitsky, S. I., Tar, M., Melman, A. & Davies, K. P., Aug 2008, In: Journal of Urology. 180, 2, p. 760-766 7 p.

  Research output: Contribution to journal › Article › peer-review
  16 Scopus citations

• Transcription of human papillomavirus type 16 early genes in a cervical cancer and a cancer-derived cell line and identification of the E7 protein

  Smotkin, D. & Wettstein, F. O., 1986, In: Proceedings of the National Academy of Sciences of the United States of America. 83, 13, p. 4680-4684 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  501 Scopus citations

• Transcription of native and denatured DNA preparations by bacteriophage T3 induced RNA polymerase.

  Maitra, U., Chakraborty, P. R., Salvo, R. A., Huang, H. H., Bandyopadhyay, P. & Sarkar, P., 1974, In: Basic life sciences. 3, p. 125-144 20 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription of the KpnI families of long interspersed DNAs in human cells

  Shafit-Zagardo, B., Brown, F. L., Zavodny, P. J. & Maio, J. J., 1983, In: Nature. 304, 5923, p. 277-280 4 p.

  Research output: Contribution to journal › Article › peer-review
  57 Scopus citations

• Transcription of the segment-polarity gene wingless in the imaginal discs of Drosophila, and the phenotype of a pupal-lethal wg mutation

  Baker, N. E., 1988, In: Development. 102, 3, p. 489-497 9 p.

  Research output: Contribution to journal › Article › peer-review
  157 Scopus citations

• Transcription termination in the Escherichia coli dnaA gene is not mediated by the internal DnaA box

  Perez-Roger, I., Macian, F. & Armengod, M. E., 1995, In: Journal of Bacteriology. 177, 7, p. 1896-1899 4 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• Transcriptome analysis of human diabetic kidney disease

  Woroniecka, K. I., Park, A. S. D., Mohtat, D., Thomas, D. B., Pullman, J. M. & Susztak, K., Sep 2011, In: Diabetes. 60, 9, p. 2354-2369 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  321 Scopus citations

• Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress

  Zhao, D., Mokhtari, R., Pedrosa, E., Birnbaum, R., Zheng, D. & Lachman, H. M., Mar 29 2017, In: Molecular Autism. 8, 1, 17.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  30 Scopus citations

• Transcriptome analysis of mycobacteria-specific CD4⁺ T cells identified by activation-induced expression of CD154

  Kunnath-Velayudhan, S., Goldberg, M. F., Saini, N. K., Johndrow, C. T., Ng, T. W., Johnson, A. J., Xu, J., Chan, J., Jacobs, W. R. & Porcelli, S. A., Oct 1 2017, In: Journal of Immunology. 199, 7, p. 2596-2606 11 p.

  Research output: Contribution to journal › Article › peer-review
  6 Scopus citations

• Transcriptome analysis of neural progenitor cells derived from Lowe syndrome induced pluripotent stem cells: Identification of candidate genes for the neurodevelopmental and eye manifestations

  Liu, H., Barnes, J., Pedrosa, E., Herman, N. S., Salas, F., Wang, P., Zheng, D. & Lachman, H. M., May 11 2020, In: Journal of Neurodevelopmental Disorders. 12, 1, 14.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  5 Scopus citations

• Transcriptome Comparison of Human Neurons Generated Using Induced Pluripotent Stem Cells Derived from Dental Pulp and Skin Fibroblasts

  Chen, J., Lin, M., Foxe, J. J., Pedrosa, E., Hrabovsky, A., Carroll, R., Zheng, D. & Lachman, H. M., Oct 3 2013, In: PloS one. 8, 10, e75682.

  Research output: Contribution to journal › Article › peer-review
  35 Scopus citations

• Transcriptome profile of the murine macrophage cell response to Candida parapsilosis

  Németh, T., Tóth, A., Hamari, Z., Falus, A., Éder, K., Vágvölgyi, C., Guimaraes, A. J., Nosanchuk, J. D. & Gácser, A., Apr 2014, In: Fungal Genetics and Biology. 65, p. 48-56 9 p.

  Research output: Contribution to journal › Article › peer-review
  12 Scopus citations

• Transcriptome profiling of hippocampal CA1 after early-life seizure-induced preconditioning may elucidate new genetic therapies for epilepsy

  Friedman, L. K., Mancuso, J., Patel, A., Kudur, V., Leheste, J. R., Iacobas, S., Botta, J., Iacobas, D. A. & Spray, D. C., Jul 2013, In: European Journal of Neuroscience. 38, 1, p. 2139-2152 14 p.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Transcriptome signature of immune cells post reovirus treatment in kras mutated colorectal cancer

  Fogel, E. J., Samouha, A., Goel, S. & Maitra, R., 2021, In: Cancer Management and Research. 13, p. 6743-6754 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptome-wide association study of blood cell traits in african ancestry and hispanic/latino populations

  Wen, J., Xie, M., Rowland, B., Rosen, J. D., Sun, Q., Chen, J., Tapia, A. L., Qian, H., Kowalski, M. H., Shan, Y., Young, K. L., Graff, M., Argos, M., Avery, C. L., Bien, S. A., Buyske, S., Yin, J., Choquet, H., Fornage, M., Hodonsky, C. J. & 16 others, Jorgenson, E., Kooperberg, C., Loos, R. J. F., Liu, Y., Moon, J. Y., North, K. E., Rich, S. S., Rotter, J. I., Smith, J. A., Zhao, W., Shang, L., Wang, T., Zhou, X., Reiner, A. P., Raffield, L. M. & Li, Y., Jul 2021, In: Genes. 12, 7, 1049.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Transcriptomic alterations in Trypanosoma cruzi-infected cardiac myocytes

  Goldenberg, R. C. D. S., Iacobas, D. A., Iacobas, S., Rocha, L. L., da Silva de Azevedo Fortes, F., Vairo, L., Nagajyothi, F., Campos de Carvalho, A. C., Tanowitz, H. B. & Spray, D. C., Dec 2009, In: Microbes and Infection. 11, 14-15, p. 1140-1149 10 p.

  Research output: Contribution to journal › Article › peer-review
  29 Scopus citations

• Transcriptomic analysis and novel insights into lens fibre cell differentiation regulated by Gata3

  Martynova, E., Zhao, Y., Xie, Q., Zheng, D. & Cvekl, A., Dec 1 2019, In: Open Biology. 9, 12, 190220.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  5 Scopus citations

• Transcriptomic analysis of pancreatic cancer cells in response to metformin and aspirin: An implication of synergy

  Yue, W., Wang, T., Zachariah, E., Lin, Y., Yang, C. S., Xu, Q., DiPaola, R. S. & Tan, X. L., Aug 21 2015, In: Scientific reports. 5, 13390.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  27 Scopus citations

• Transcriptomic and metabonomic profiling of obesity-prone and obesity-resistant rats under high fat diet

  Li, H., Xie, Z., Lin, J., Song, H., Wang, Q., Wang, K., Su, M., Qiu, Y., Zhao, T., Song, K., Wang, X., Zhou, M., Liu, P., Zhao, G., Zhang, Q. & Jia, W., Nov 2008, In: Journal of Proteome Research. 7, 11, p. 4775-4783 9 p.

  Research output: Contribution to journal › Article › peer-review
  73 Scopus citations

• Transcriptomic and metabonomic profiling reveal synergistic effects of quercetin and resveratrol supplementation in high fat diet fed mice

  Zhou, M., Wang, S., Zhao, A., Wang, K., Fan, Z., Yang, H., Liao, W., Bao, S., Zhao, L., Zhang, Y., Yang, Y., Qiu, Y., Xie, G., Li, H. & Jia, W., Oct 5 2012, In: Journal of Proteome Research. 11, 10, p. 4961-4971 11 p.

  Research output: Contribution to journal › Article › peer-review
  44 Scopus citations

• Transcriptomic Changes Highly Similar to Alzheimer’s Disease Are Observed in a Subpopulation of Individuals During Normal Brain Aging

  Peng, S., Zeng, L., Haure-Mirande, J. V., Wang, M., Huffman, D. M., Haroutunian, V., Ehrlich, M. E., Zhang, B. & Tu, Z., Dec 1 2021, In: Frontiers in Aging Neuroscience. 13, 711524.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• Transcriptomic changes in developing kidney exposed to chronic hypoxia

  Iacobas, D. A., Fan, C., Iacobas, S., Spray, D. C. & Haddad, G. G., Oct 13 2006, In: Biochemical and Biophysical Research Communications. 349, 1, p. 329-338 10 p.

  Research output: Contribution to journal › Article › peer-review
  32 Scopus citations

• Transcriptomic characterization of four classes of cell-cell/cell-matrix genes in brains and hearts of wild type and connexin43 null mice.

  Iacobaş, D. A., Urban, M., Iacobaş, S. & Spray, D. C., 2002, In: Romanian journal of physiology : physiological sciences / [Academia de Stiinte Medicale]. 39-40, p. 91-116 26 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations

• Transcriptomic dynamics of breast cancer progression in the MMTV-PyMT mouse model

  Cai, Y., Nogales-Cadenas, R., Zhang, Q., Lin, J. R., Zhang, W., O'Brien, K., Montagna, C. & Zhang, Z. D., Feb 17 2017, In: BMC Genomics. 18, 1, 185.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Transcriptomic profiling of the canine tachycardia-induced heart failure model: Global comparison to human and murine heart failure

  Gao, Z., Xu, H., DiSilvestre, D., Halperin, V. L., Tunin, R., Tian, Y., Yu, W., Winslow, R. L. & Tomaselli, G. F., Jan 2006, In: Journal of Molecular and Cellular Cardiology. 40, 1, p. 76-86 11 p.

  Research output: Contribution to journal › Article › peer-review
  46 Scopus citations

• Transcriptomic signatures of alterations in a myoblast cell line infected with four distinct strains of Trypanosoma cruzi

  Adesse, D., Garzoni, L. R., Meirelles, M. D. N., Iacobas, D. A., Iacobas, S., Spray, D. C. & Tanowitz, H. B., May 2010, In: American Journal of Tropical Medicine and Hygiene. 82, 5, p. 846-854 9 p.

  Research output: Contribution to journal › Article › peer-review
  16 Scopus citations

• Transcutaneous and Percutaneous Neurostimulation for Headache Disorders

  Robbins, M. S. & Lipton, R. B., Apr 1 2017, In: Headache. 57, p. 4-13 10 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Transcutaneous Electrical Nerve Stimulation as a Treatment for Neuropathic Cough: A Tolerability and Feasibility Study

  Michalowski, A., Haines, A., Shaparin, N., Gritsenko, K., Kaye, A. D., Cornett, E. M. & Lerner, M. Z., Dec 2021, In: Neurology and Therapy. 10, 2, p. 1127-1133 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access