Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP

Eun Jeonq Cho, Litao Yanq, Matthew Lew, Andrew D. Ellinqton

Research output: Contribution to journalArticle

158 Citations (Scopus)

Abstract

An allosteric ribozyme (aptazyme) has been used to transduce the binding of a small organic analyte (ATP) into the ligation of a circular template for rolling circle amplification (RCA). An ATP-activated deoxyribozyme ligase was immobilized on a glass slide and, upon addition of ATP, catalyzed the ligation of a circular padlock probe. The ligated products could be directly amplified and visualized via RCA. The coupled reaction exhibited could detect as little as 1 μM of ATP and could discriminate against structurally similar nucleotides such as GTP, CTP, and UTP. Cooperative ATP activation of the deoxyribozyme was faithfully mimicked by RCA, yielding an amplified "switch" that was responsive to ATP concentration.

Original languageEnglish (US)
Pages (from-to)2022-2023
Number of pages2
JournalJournal of the American Chemical Society
Volume127
Issue number7
DOIs
StatePublished - Feb 23 2005
Externally publishedYes

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Catalytic DNA
Adenosinetriphosphate
Ligases
Amplification
Adenosine Triphosphate
Acids
Ligation
Cytidine Triphosphate
Catalytic RNA
Uridine Triphosphate
Nucleotides
Guanosine Triphosphate
Glass
Chemical activation
Switches

ASJC Scopus subject areas

  • Chemistry(all)

Cite this

Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP. / Cho, Eun Jeonq; Yanq, Litao; Lew, Matthew; Ellinqton, Andrew D.

In: Journal of the American Chemical Society, Vol. 127, No. 7, 23.02.2005, p. 2022-2023.

Research output: Contribution to journalArticle

Cho, Eun Jeonq ; Yanq, Litao ; Lew, Matthew ; Ellinqton, Andrew D. / Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP. In: Journal of the American Chemical Society. 2005 ; Vol. 127, No. 7. pp. 2022-2023.
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