Tilescope: Online analysis pipeline for high-density tiling microarray data

Zhengdong D. Zhang, Joel Rozowsky, Hugo Y.K. Lam, Jiang Du, Michael Snyder, Mark Gerstein

Research output: Contribution to journalArticle

34 Scopus citations

Abstract

We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.

Original languageEnglish (US)
Article numberR81
JournalGenome biology
Volume8
Issue number5
DOIs
StatePublished - May 14 2007
Externally publishedYes

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

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