Tilescope: Online analysis pipeline for high-density tiling microarray data

Zhengdong Zhang, Joel Rozowsky, Hugo Y K Lam, Jiang Du, Michael Snyder, Mark Gerstein

Research output: Contribution to journalArticle

33 Citations (Scopus)

Abstract

We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.

Original languageEnglish (US)
Article numberR81
JournalGenome Biology
Volume8
Issue number5
DOIs
StatePublished - May 14 2007
Externally publishedYes

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genomics
analysis
experiment
programme

ASJC Scopus subject areas

  • Genetics
  • Cell Biology
  • Ecology, Evolution, Behavior and Systematics

Cite this

Tilescope : Online analysis pipeline for high-density tiling microarray data. / Zhang, Zhengdong; Rozowsky, Joel; Lam, Hugo Y K; Du, Jiang; Snyder, Michael; Gerstein, Mark.

In: Genome Biology, Vol. 8, No. 5, R81, 14.05.2007.

Research output: Contribution to journalArticle

Zhang, Zhengdong ; Rozowsky, Joel ; Lam, Hugo Y K ; Du, Jiang ; Snyder, Michael ; Gerstein, Mark. / Tilescope : Online analysis pipeline for high-density tiling microarray data. In: Genome Biology. 2007 ; Vol. 8, No. 5.
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