Abstract
We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.
| Original language | English (US) |
|---|---|
| Article number | R81 |
| Journal | Genome Biology |
| Volume | 8 |
| Issue number | 5 |
| DOIs | |
| State | Published - May 14 2007 |
| Externally published | Yes |
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ASJC Scopus subject areas
- Genetics
- Cell Biology
- Ecology, Evolution, Behavior and Systematics
Cite this
Tilescope : Online analysis pipeline for high-density tiling microarray data. / Zhang, Zhengdong; Rozowsky, Joel; Lam, Hugo Y K; Du, Jiang; Snyder, Michael; Gerstein, Mark.
In: Genome Biology, Vol. 8, No. 5, R81, 14.05.2007.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Tilescope
T2 - Online analysis pipeline for high-density tiling microarray data
AU - Zhang, Zhengdong
AU - Rozowsky, Joel
AU - Lam, Hugo Y K
AU - Du, Jiang
AU - Snyder, Michael
AU - Gerstein, Mark
PY - 2007/5/14
Y1 - 2007/5/14
N2 - We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.
AB - We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.
UR - http://www.scopus.com/inward/record.url?scp=34548300744&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=34548300744&partnerID=8YFLogxK
U2 - 10.1186/gb-2007-8-5-r81
DO - 10.1186/gb-2007-8-5-r81
M3 - Article
C2 - 17501994
AN - SCOPUS:34548300744
VL - 8
JO - Genome Biology
JF - Genome Biology
SN - 1474-7596
IS - 5
M1 - R81
ER -