Tilescope: Online analysis pipeline for high-density tiling microarray data

Zhengdong D. Zhang; Joel Rozowsky; Hugo Y.K. Lam; Jiang Du; Michael Snyder; Mark Gerstein

doi:10.1186/gb-2007-8-5-r81

Tilescope: Online analysis pipeline for high-density tiling microarray data

Zhengdong D. Zhang, Joel Rozowsky, Hugo Y.K. Lam, Jiang Du, Michael Snyder, Mark Gerstein

Research output: Contribution to journal › Article › peer-review

34 Scopus citations

Abstract

We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.

Original language	English (US)
Article number	R81
Journal	Genome biology
Volume	8
Issue number	5
DOIs	https://doi.org/10.1186/gb-2007-8-5-r81
State	Published - May 14 2007
Externally published	Yes

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

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AU - Snyder, Michael

AU - Gerstein, Mark

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Tilescope: Online analysis pipeline for high-density tiling microarray data

Abstract

ASJC Scopus subject areas

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