The 3DGD: A database of genome 3D structure

Chao Li, Xiao Dong, Haiwei Fan, Chuan Wang, Guohui Ding, Yixue Li

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Summary: The studies of chromatin 3D structure help us to understand its formation and function. Techniques combining chromosome conformation capture and next generation sequencing can capture chromatin structure information and has been applied to several different species and cell lines. We built 3DGD (3D Genome Database), a database that currently collected Hi-C data on four species, for easy accessing and visualization of chromatin 3D structure data. With the integration of other omics data such as genome-wide protein-DNA-binding data, this data source would be useful for researchers interested in chromatin structure and its biological functions.

Original languageEnglish (US)
Pages (from-to)1640-1642
Number of pages3
JournalBioinformatics
Volume30
Issue number11
DOIs
StatePublished - Jun 1 2014
Externally publishedYes

Fingerprint

Chromatin
Genome
Genes
Databases
Chromosomes
Conformations
DNA
Visualization
Cells
Proteins
DNA-binding Protein
Information Structure
Information Storage and Retrieval
DNA-Binding Proteins
Conformation
Sequencing
Chromosome
Data Structures
Research Personnel
Cell Line

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

Cite this

Li, C., Dong, X., Fan, H., Wang, C., Ding, G., & Li, Y. (2014). The 3DGD: A database of genome 3D structure. Bioinformatics, 30(11), 1640-1642. https://doi.org/10.1093/bioinformatics/btu081

The 3DGD : A database of genome 3D structure. / Li, Chao; Dong, Xiao; Fan, Haiwei; Wang, Chuan; Ding, Guohui; Li, Yixue.

In: Bioinformatics, Vol. 30, No. 11, 01.06.2014, p. 1640-1642.

Research output: Contribution to journalArticle

Li, C, Dong, X, Fan, H, Wang, C, Ding, G & Li, Y 2014, 'The 3DGD: A database of genome 3D structure', Bioinformatics, vol. 30, no. 11, pp. 1640-1642. https://doi.org/10.1093/bioinformatics/btu081
Li, Chao ; Dong, Xiao ; Fan, Haiwei ; Wang, Chuan ; Ding, Guohui ; Li, Yixue. / The 3DGD : A database of genome 3D structure. In: Bioinformatics. 2014 ; Vol. 30, No. 11. pp. 1640-1642.
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