Testing the robustness of the new Haseman-Elston quantitative-trait loci-mapping procedure

David B. Allison, José R. Fernández, Moonseong Heo, T. Mark Beasley

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Variance components (VC) techniques have emerged as among the more powerful methods for detection of quantitative-trait loci (QTL) in linkage analysis. Allison et al. found that, with particularly marked leptokurtosis in the phenotypic distribution and moderate-to-high residual sibling correlation, maximum likelihood (ML) VC methods may produce a severe excess of type I errors. The new Haseman-Elston (NHE) method is a least-squares- based VC method for mapping of QTL in sib pairs (Elston et al.). Using simulation, we investigate the robustness of the NHE to marked nonnormality, by means of the same distributions and worst-case conditions identified by Allison et al. for the ML approach (i.e., 100 pairs; high residual sibling correlation). Results showed that, when marked nonnormality is present, the NHE can be used without severe type I error-rate inflation, even at very small alpha levels.

Original languageEnglish (US)
Pages (from-to)249-252
Number of pages4
JournalAmerican Journal of Human Genetics
Volume67
Issue number1
DOIs
StatePublished - 2000
Externally publishedYes

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Quantitative Trait Loci
Economic Inflation
Least-Squares Analysis

ASJC Scopus subject areas

  • Genetics

Cite this

Testing the robustness of the new Haseman-Elston quantitative-trait loci-mapping procedure. / Allison, David B.; Fernández, José R.; Heo, Moonseong; Beasley, T. Mark.

In: American Journal of Human Genetics, Vol. 67, No. 1, 2000, p. 249-252.

Research output: Contribution to journalArticle

Allison, David B. ; Fernández, José R. ; Heo, Moonseong ; Beasley, T. Mark. / Testing the robustness of the new Haseman-Elston quantitative-trait loci-mapping procedure. In: American Journal of Human Genetics. 2000 ; Vol. 67, No. 1. pp. 249-252.
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