Specialized transduction: An efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis

Stoyan Bardarov, Svetoslav Bardarov, Martin S. Pavelka, Vasan Sambandamurthy, Michelle H. Larsen, JoAnn Tufariello, John Chan, Graham Hatfull, William R. Jacobs

Research output: Contribution to journalArticle

351 Citations (Scopus)

Abstract

The authors have developed a simple and highly efficient system for generating allelic exchanges in both fast- and slow-growing mycobacteria. In this procedure a gene of interest, disrupted by a selectable marker, is cloned into a conditionally replicating (temperature-sensitive) shuttle phasmid to generate a specialized transducing mycobacteriophage. The temperature-sensitive mutations in the mycobacteriophage genome permit replication at the permissive temperature of 30 °C but prevent replication at the non-permissive temperature of 37 °C. Transduction at a non-permissive temperature results in highly efficient delivery of the recombination substrate to virtually all cells in the recipient population. The deletion mutations in the targeted genes are marked with antibiotic-resistance genes that are flanked by γδ-res (resolvase recognition target) sites. The transductants which have undergone a homologous recombination event can be conveniently selected on antibiotic-containing media. To demonstrate the utility of this genetic system seven different targeted gene disruptions were generated in three substrains of Mycobacterium bovis BCG, three strains of Mycobacterium tuberculosis, and Mycobacterium smegmatis. Mutants in the lysA, nadBC, panC, panCD, leuCD, Rv3291c and Rv0867c genes or operons were isolated as antibiotic-resistant (and in some cases auxotrophic) transductants. Using a plasmid encoding the γδ-resolvase (tnpR), the resistance genes could be removed, generating unmarked deletion mutations. It is concluded from the high frequency of allelic exchange events observed in this study that specialized transduction is a very efficient technique for genetic manipulation of mycobacteria and is a method of choice for constructing isogenic strains of M. tuberculosis, BCG or M. smegmatis which differ by defined mutations.

Original languageEnglish (US)
Pages (from-to)3007-3017
Number of pages11
JournalMicrobiology
Volume148
Issue number10
StatePublished - Oct 2002

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Smegma
Mycobacterium bovis
Mycobacterium tuberculosis
Mycobacteriophages
Temperature
Genes
Mycobacterium smegmatis
Recombinases
Sequence Deletion
Mycobacterium
Anti-Bacterial Agents
Genetic Techniques
Mutation
Homologous Recombination
Operon
Microbial Drug Resistance
Genetic Recombination
Plasmids
Genome
Population

Keywords

  • Allelic exchange
  • Homologous recombination
  • Mycobacteriophage

ASJC Scopus subject areas

  • Microbiology

Cite this

Bardarov, S., Bardarov, S., Pavelka, M. S., Sambandamurthy, V., Larsen, M. H., Tufariello, J., ... Jacobs, W. R. (2002). Specialized transduction: An efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis. Microbiology, 148(10), 3007-3017.

Specialized transduction : An efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis. / Bardarov, Stoyan; Bardarov, Svetoslav; Pavelka, Martin S.; Sambandamurthy, Vasan; Larsen, Michelle H.; Tufariello, JoAnn; Chan, John; Hatfull, Graham; Jacobs, William R.

In: Microbiology, Vol. 148, No. 10, 10.2002, p. 3007-3017.

Research output: Contribution to journalArticle

Bardarov, S, Bardarov, S, Pavelka, MS, Sambandamurthy, V, Larsen, MH, Tufariello, J, Chan, J, Hatfull, G & Jacobs, WR 2002, 'Specialized transduction: An efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis', Microbiology, vol. 148, no. 10, pp. 3007-3017.
Bardarov, Stoyan ; Bardarov, Svetoslav ; Pavelka, Martin S. ; Sambandamurthy, Vasan ; Larsen, Michelle H. ; Tufariello, JoAnn ; Chan, John ; Hatfull, Graham ; Jacobs, William R. / Specialized transduction : An efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis. In: Microbiology. 2002 ; Vol. 148, No. 10. pp. 3007-3017.
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