Neighboring group participation in the transition state of human purine nucleoside phosphorylase

Andrew S. Murkin, Matthew R. Birck, Agnes Rinaldo-Matthis, Wuxian Shi, Erika A. Taylor, Steven C. Almo, Vern L. Schramm

Research output: Contribution to journalArticle

45 Scopus citations

Abstract

The X-ray crystal structures of human purine nucleoside phosphorylase (PNP) with bound inosine or transition-state analogues show His257 within hydrogen bonding distance of the 5′-hydroxyl. The mutants His257Phe, His257Gly, and His257Asp exhibited greatly decreased affinity for Immucillin-H (ImmH), binding this mimic of an early transition state as much as 370-fold (Km/Ki) less tightly than native PNP. In contrast, these mutants bound DADMe-ImmH, a mimic of a late transition state, nearly as well as the native enzyme. These results indicate that His257 serves an important role in the early stages of transition-state formation. Whereas mutation of His257 resulted in little variation in the PNP·DADMe-ImmH·SO4 structures, His257Phe· ImmH·PO4 showed distortion at the 5′-hydroxyl, indicating the importance of H-bonding in positioning this group during progression to the transition state. Binding isotope effect (BIE) and kinetic isotope effect (KIE) studies of the remote 5′-3H for the arsenolysis of inosine with native PNP revealed a BIE of 1.5% and an unexpectedly large intrinsic KIE of 4.6%. This result is interpreted as a moderate electronic distortion toward the transition state in the Michaelis complex with continued development of a similar distortion at the transition state. The mutants His257Phe, His257Gly, and His257Asp altered the 5′-3H intrinsic KIE to -3, -14, and 7%, respectively, while the BIEs contributed 2, 2, and -2%, respectively. These surprising results establish that forces in the Michaelis complex, reported by the BIEs, can be reversed or enhanced at the transition state.

Original languageEnglish (US)
Pages (from-to)5038-5049
Number of pages12
JournalBiochemistry
Volume46
Issue number17
DOIs
StatePublished - May 1 2007

ASJC Scopus subject areas

  • Biochemistry

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