Molecular epidemiology of clinical Cryptococcus neoformans strains from India

N. Jain, B. L. Wickes, S. M. Keller, J. Fu, A. Casadevall, P. Jain, M. A. Ragan, U. Banerjee, B. C. Fries

Research output: Contribution to journalArticle

74 Citations (Scopus)

Abstract

Little is known about the molecular epidemiology of the human pathogenic fungus Cryptococcus neoformans in India, a country now in the midst of an epidemic of AIDS-related cryptococcosis. We studied 57 clinical isolates from several regions in India, of which 51 were C. neoformans var. grubii, 1 was C. neoformans var. neoformans, and 5 were C. neoformans var. gattii. This strain set included 18 additional sequential isolates from 14 patients. Strains were characterized phenotypically by measuring the polysaccharide capsule and by determining the MICs of standard antifungals. Molecular typing was performed by a PCR-based method using the minisatellite-specific core sequence (M13), by electrophoretic karyotyping, by restriction fragment length polymorphisms with the C. neoformans transposon 1 (TCN-1), and by URA5 DNA sequence analysis. Overall, Indian isolates were less heterogeneous than isolates from other regions and included a subset that clustered into one group based on URA5 DNA sequence analysis. In summary, our results demonstrate (i) differences in genetic diversity of C. neoformans isolates from India compared to isolates from other regions in the world; (ii) that DNA typing with the TCN-1 probe can adequately distinguish C. neoformans var. grubii strains; (iii) that TCN-1 sequences are absent in many C. neoformans var. gattii strains, supporting previous studies indicating that these strains have a limited geographical dispersal; and (iv) that human cryptococcal infection can be associated with microevolution of the infecting strain and by simultaneous coinfection with two distinct C. neoformans strains.

Original languageEnglish (US)
Pages (from-to)5733-5742
Number of pages10
JournalJournal of Clinical Microbiology
Volume43
Issue number11
DOIs
StatePublished - Nov 2005
Externally publishedYes

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Cryptococcus neoformans
Molecular Epidemiology
India
DNA Sequence Analysis
Molecular Typing
Cryptococcosis
Karyotyping
Minisatellite Repeats
DNA Fingerprinting
Coinfection
Restriction Fragment Length Polymorphisms
Capsules
Polysaccharides
Acquired Immunodeficiency Syndrome
Fungi

ASJC Scopus subject areas

  • Microbiology (medical)
  • Microbiology

Cite this

Jain, N., Wickes, B. L., Keller, S. M., Fu, J., Casadevall, A., Jain, P., ... Fries, B. C. (2005). Molecular epidemiology of clinical Cryptococcus neoformans strains from India. Journal of Clinical Microbiology, 43(11), 5733-5742. https://doi.org/10.1128/JCM.43.11.5733-5742.2005

Molecular epidemiology of clinical Cryptococcus neoformans strains from India. / Jain, N.; Wickes, B. L.; Keller, S. M.; Fu, J.; Casadevall, A.; Jain, P.; Ragan, M. A.; Banerjee, U.; Fries, B. C.

In: Journal of Clinical Microbiology, Vol. 43, No. 11, 11.2005, p. 5733-5742.

Research output: Contribution to journalArticle

Jain, N, Wickes, BL, Keller, SM, Fu, J, Casadevall, A, Jain, P, Ragan, MA, Banerjee, U & Fries, BC 2005, 'Molecular epidemiology of clinical Cryptococcus neoformans strains from India', Journal of Clinical Microbiology, vol. 43, no. 11, pp. 5733-5742. https://doi.org/10.1128/JCM.43.11.5733-5742.2005
Jain, N. ; Wickes, B. L. ; Keller, S. M. ; Fu, J. ; Casadevall, A. ; Jain, P. ; Ragan, M. A. ; Banerjee, U. ; Fries, B. C. / Molecular epidemiology of clinical Cryptococcus neoformans strains from India. In: Journal of Clinical Microbiology. 2005 ; Vol. 43, No. 11. pp. 5733-5742.
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