Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL)

Potential genomic intersection of iron and glucose regulation?

Laura M. Raffield, Tin Louie, Tamar Sofer, Deepti Jain, Eli Ipp, Kent D. Taylor, George J. Papanicolaou, Larissa Avilés-Santa, Leslie A. Lange, Cathy C. Laurie, Matthew P. Conomos, Timothy A. Thornton, Yii Der Ida Chen, Qibin Qi, Scott Cotler, Bharat Thyagarajan, Neil Schneiderman, Jerome I. Rotter, Alex P. Reiner, Henry J. Lin

Research output: Contribution to journalArticle

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Abstract

Genetic variants contribute to normal variation of iron-related traits and may also cause clinical syndromes of iron deficiency or excess. Iron overload and deficiency can adversely affect human health. For example, elevated iron storage is associated with increased diabetes risk, although mechanisms are still being investigated. We conducted the first genome-wide association study of serum iron, total iron binding capacity (TIBC), transferrin saturation, and ferritin in a Hispanic/Latino cohort, the Hispanic Community Health Study/Study of Latinos (>12 000 participants) and also assessed the generalization of previously known loci to this population. We then evaluated whether iron-associated variants were associated with diabetes and glycemic traits. We found evidence for a novel association between TIBC and a variant near the gene for protein phosphatase 1, regulatory subunit 3B (PPP1R3B; rs4841132, β=-0.116, P=7.44 x 10-8). The effect strengthened when iron deficient individuals were excluded (β=-0.121, P=4.78 x 10-9). Ten of sixteen variants previously associated with iron traits generalized to HCHS/SOL, including variants at the transferrin (TF), hemochromatosis (HFE), fatty acid desaturase 2 (FADS2)/myelin regulatory factor (MYRF), transmembrane protease, serine 6 (TMPRSS6), transferrin receptor (TFR2), N-acetyltransferase 2 (arylamine N-acetyltransferase) (NAT2), ABO blood group (ABO), and GRB2 associated binding protein 3 (GAB3) loci. In examining iron variant associations with glucose homeostasis, an iron-raising variant of TMPRSS6 was associated with lower HbA1c levels (P=8.66 x 10-10). This association was attenuated upon adjustment for iron measures. In contrast, the iron-raising allele of PPP1R3B was associated with higher levels of fasting glucose (P = 7.70 x 10-7) and fasting insulin (P=4.79 x 10-6), but these associations were not attenuated upon adjustment for TIBC-so iron is not likely a mediator. These results provide new genetic information on iron traits and their connection with glucose homeostasis.

Original languageEnglish (US)
Pages (from-to)1966-1978
Number of pages13
JournalHuman Molecular Genetics
Volume26
Issue number10
DOIs
StatePublished - May 15 2017

Fingerprint

Genome-Wide Association Study
Hispanic Americans
Iron
Glucose
Health
Serine Proteases
Transferrin
Fasting
Homeostasis
Arylamine N-Acetyltransferase
Fatty Acid Desaturases
Protein Phosphatase 1
Transferrin Receptors
Iron Overload
Hemochromatosis
Ferritins
Blood Group Antigens
Myelin Sheath

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics
  • Genetics(clinical)

Cite this

Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) : Potential genomic intersection of iron and glucose regulation? / Raffield, Laura M.; Louie, Tin; Sofer, Tamar; Jain, Deepti; Ipp, Eli; Taylor, Kent D.; Papanicolaou, George J.; Avilés-Santa, Larissa; Lange, Leslie A.; Laurie, Cathy C.; Conomos, Matthew P.; Thornton, Timothy A.; Chen, Yii Der Ida; Qi, Qibin; Cotler, Scott; Thyagarajan, Bharat; Schneiderman, Neil; Rotter, Jerome I.; Reiner, Alex P.; Lin, Henry J.

In: Human Molecular Genetics, Vol. 26, No. 10, 15.05.2017, p. 1966-1978.

Research output: Contribution to journalArticle

Raffield, LM, Louie, T, Sofer, T, Jain, D, Ipp, E, Taylor, KD, Papanicolaou, GJ, Avilés-Santa, L, Lange, LA, Laurie, CC, Conomos, MP, Thornton, TA, Chen, YDI, Qi, Q, Cotler, S, Thyagarajan, B, Schneiderman, N, Rotter, JI, Reiner, AP & Lin, HJ 2017, 'Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): Potential genomic intersection of iron and glucose regulation?', Human Molecular Genetics, vol. 26, no. 10, pp. 1966-1978. https://doi.org/10.1093/hmg/ddx082
Raffield, Laura M. ; Louie, Tin ; Sofer, Tamar ; Jain, Deepti ; Ipp, Eli ; Taylor, Kent D. ; Papanicolaou, George J. ; Avilés-Santa, Larissa ; Lange, Leslie A. ; Laurie, Cathy C. ; Conomos, Matthew P. ; Thornton, Timothy A. ; Chen, Yii Der Ida ; Qi, Qibin ; Cotler, Scott ; Thyagarajan, Bharat ; Schneiderman, Neil ; Rotter, Jerome I. ; Reiner, Alex P. ; Lin, Henry J. / Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL) : Potential genomic intersection of iron and glucose regulation?. In: Human Molecular Genetics. 2017 ; Vol. 26, No. 10. pp. 1966-1978.
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abstract = "Genetic variants contribute to normal variation of iron-related traits and may also cause clinical syndromes of iron deficiency or excess. Iron overload and deficiency can adversely affect human health. For example, elevated iron storage is associated with increased diabetes risk, although mechanisms are still being investigated. We conducted the first genome-wide association study of serum iron, total iron binding capacity (TIBC), transferrin saturation, and ferritin in a Hispanic/Latino cohort, the Hispanic Community Health Study/Study of Latinos (>12 000 participants) and also assessed the generalization of previously known loci to this population. We then evaluated whether iron-associated variants were associated with diabetes and glycemic traits. We found evidence for a novel association between TIBC and a variant near the gene for protein phosphatase 1, regulatory subunit 3B (PPP1R3B; rs4841132, β=-0.116, P=7.44 x 10-8). The effect strengthened when iron deficient individuals were excluded (β=-0.121, P=4.78 x 10-9). Ten of sixteen variants previously associated with iron traits generalized to HCHS/SOL, including variants at the transferrin (TF), hemochromatosis (HFE), fatty acid desaturase 2 (FADS2)/myelin regulatory factor (MYRF), transmembrane protease, serine 6 (TMPRSS6), transferrin receptor (TFR2), N-acetyltransferase 2 (arylamine N-acetyltransferase) (NAT2), ABO blood group (ABO), and GRB2 associated binding protein 3 (GAB3) loci. In examining iron variant associations with glucose homeostasis, an iron-raising variant of TMPRSS6 was associated with lower HbA1c levels (P=8.66 x 10-10). This association was attenuated upon adjustment for iron measures. In contrast, the iron-raising allele of PPP1R3B was associated with higher levels of fasting glucose (P = 7.70 x 10-7) and fasting insulin (P=4.79 x 10-6), but these associations were not attenuated upon adjustment for TIBC-so iron is not likely a mediator. These results provide new genetic information on iron traits and their connection with glucose homeostasis.",
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AU - Raffield, Laura M.

AU - Louie, Tin

AU - Sofer, Tamar

AU - Jain, Deepti

AU - Ipp, Eli

AU - Taylor, Kent D.

AU - Papanicolaou, George J.

AU - Avilés-Santa, Larissa

AU - Lange, Leslie A.

AU - Laurie, Cathy C.

AU - Conomos, Matthew P.

AU - Thornton, Timothy A.

AU - Chen, Yii Der Ida

AU - Qi, Qibin

AU - Cotler, Scott

AU - Thyagarajan, Bharat

AU - Schneiderman, Neil

AU - Rotter, Jerome I.

AU - Reiner, Alex P.

AU - Lin, Henry J.

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N2 - Genetic variants contribute to normal variation of iron-related traits and may also cause clinical syndromes of iron deficiency or excess. Iron overload and deficiency can adversely affect human health. For example, elevated iron storage is associated with increased diabetes risk, although mechanisms are still being investigated. We conducted the first genome-wide association study of serum iron, total iron binding capacity (TIBC), transferrin saturation, and ferritin in a Hispanic/Latino cohort, the Hispanic Community Health Study/Study of Latinos (>12 000 participants) and also assessed the generalization of previously known loci to this population. We then evaluated whether iron-associated variants were associated with diabetes and glycemic traits. We found evidence for a novel association between TIBC and a variant near the gene for protein phosphatase 1, regulatory subunit 3B (PPP1R3B; rs4841132, β=-0.116, P=7.44 x 10-8). The effect strengthened when iron deficient individuals were excluded (β=-0.121, P=4.78 x 10-9). Ten of sixteen variants previously associated with iron traits generalized to HCHS/SOL, including variants at the transferrin (TF), hemochromatosis (HFE), fatty acid desaturase 2 (FADS2)/myelin regulatory factor (MYRF), transmembrane protease, serine 6 (TMPRSS6), transferrin receptor (TFR2), N-acetyltransferase 2 (arylamine N-acetyltransferase) (NAT2), ABO blood group (ABO), and GRB2 associated binding protein 3 (GAB3) loci. In examining iron variant associations with glucose homeostasis, an iron-raising variant of TMPRSS6 was associated with lower HbA1c levels (P=8.66 x 10-10). This association was attenuated upon adjustment for iron measures. In contrast, the iron-raising allele of PPP1R3B was associated with higher levels of fasting glucose (P = 7.70 x 10-7) and fasting insulin (P=4.79 x 10-6), but these associations were not attenuated upon adjustment for TIBC-so iron is not likely a mediator. These results provide new genetic information on iron traits and their connection with glucose homeostasis.

AB - Genetic variants contribute to normal variation of iron-related traits and may also cause clinical syndromes of iron deficiency or excess. Iron overload and deficiency can adversely affect human health. For example, elevated iron storage is associated with increased diabetes risk, although mechanisms are still being investigated. We conducted the first genome-wide association study of serum iron, total iron binding capacity (TIBC), transferrin saturation, and ferritin in a Hispanic/Latino cohort, the Hispanic Community Health Study/Study of Latinos (>12 000 participants) and also assessed the generalization of previously known loci to this population. We then evaluated whether iron-associated variants were associated with diabetes and glycemic traits. We found evidence for a novel association between TIBC and a variant near the gene for protein phosphatase 1, regulatory subunit 3B (PPP1R3B; rs4841132, β=-0.116, P=7.44 x 10-8). The effect strengthened when iron deficient individuals were excluded (β=-0.121, P=4.78 x 10-9). Ten of sixteen variants previously associated with iron traits generalized to HCHS/SOL, including variants at the transferrin (TF), hemochromatosis (HFE), fatty acid desaturase 2 (FADS2)/myelin regulatory factor (MYRF), transmembrane protease, serine 6 (TMPRSS6), transferrin receptor (TFR2), N-acetyltransferase 2 (arylamine N-acetyltransferase) (NAT2), ABO blood group (ABO), and GRB2 associated binding protein 3 (GAB3) loci. In examining iron variant associations with glucose homeostasis, an iron-raising variant of TMPRSS6 was associated with lower HbA1c levels (P=8.66 x 10-10). This association was attenuated upon adjustment for iron measures. In contrast, the iron-raising allele of PPP1R3B was associated with higher levels of fasting glucose (P = 7.70 x 10-7) and fasting insulin (P=4.79 x 10-6), but these associations were not attenuated upon adjustment for TIBC-so iron is not likely a mediator. These results provide new genetic information on iron traits and their connection with glucose homeostasis.

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