Frequent translocations occur between low copy repeats on chromosome 22q11.2 (LCR22s) and telomeric bands of partner chromosomes

Elizabeth Spiteri, Melanie Babcock, Catherine D. Kashork, Keiko Wakui, Swarna Gogineni, Debbie A. Lewis, Kisa M. Williams, Shinsei Minoshima, Takashi Sasaki, Nobuyoshi Shimizu, Lorraine Potocki, Venkat Pulijaal, Alan Shanske, Lisa G. Shaffer, Bernice E. Morrow

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Abstract

The chromosome 22q11.2 region is susceptible to rearrangements, mediated by low copy repeats (LCR22s). Deletions and duplications are mediated by homologous recombination events between LCR22s. The recurrent balanced constitutional translocation t(11;22)(q23;q11) breakpoint occurs in an LCR22 and is mediated by double strand breaks in AT-rich palindromes on both chromosomes 11 and 22. Recently, two cases of a t(17;22)(q11;q11) were reported, mediated by a similar mechanism (21). Except for these constitutional translocations, the molecular basis for non-recurrent, reciprocal 22q11.2 translocations is not known. To determine whether there are specific mechanisms that could mediate translocations, we analyzed cell lines derived from 14 different individuals by genotyping and FISH mapping. Somatic cell hybrid analysis was carried out for four cell lines. In five cell lines, the translocation breakpoints occurred in the same LCR22 as for the t(11;22) translocation, suggesting that similar molecular mechanisms are responsible. An additional three occurred in other LCR22s, and six were in non-LCR22 regions, mostly in the proximal half of the 22q11.2 region. The translocation breakpoints on the partner chromosomes were all located in the telomeric bands, proximal to the most telomeric unique sequence probe, in eight cell lines and distal to those loci in six. Therefore, several of the breakpoints were found to occur in the vicinity of highly dynamic regions of the genome, 22q11.2 and telomeric bands. We hypothesize that these regions are more susceptible to breakage and repair, resulting in translocations.

Original languageEnglish (US)
Pages (from-to)1823-1837
Number of pages15
JournalHuman Molecular Genetics
Volume12
Issue number15
DOIs
StatePublished - Aug 1 2003

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Genomic Segmental Duplications
Chromosomes
Cell Line
Chromosomes, Human, Pair 22
Chromosomes, Human, Pair 11
Hybrid Cells
Homologous Recombination
Genome

ASJC Scopus subject areas

  • Genetics

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Frequent translocations occur between low copy repeats on chromosome 22q11.2 (LCR22s) and telomeric bands of partner chromosomes. / Spiteri, Elizabeth; Babcock, Melanie; Kashork, Catherine D.; Wakui, Keiko; Gogineni, Swarna; Lewis, Debbie A.; Williams, Kisa M.; Minoshima, Shinsei; Sasaki, Takashi; Shimizu, Nobuyoshi; Potocki, Lorraine; Pulijaal, Venkat; Shanske, Alan; Shaffer, Lisa G.; Morrow, Bernice E.

In: Human Molecular Genetics, Vol. 12, No. 15, 01.08.2003, p. 1823-1837.

Research output: Contribution to journalArticle

Spiteri, E, Babcock, M, Kashork, CD, Wakui, K, Gogineni, S, Lewis, DA, Williams, KM, Minoshima, S, Sasaki, T, Shimizu, N, Potocki, L, Pulijaal, V, Shanske, A, Shaffer, LG & Morrow, BE 2003, 'Frequent translocations occur between low copy repeats on chromosome 22q11.2 (LCR22s) and telomeric bands of partner chromosomes', Human Molecular Genetics, vol. 12, no. 15, pp. 1823-1837. https://doi.org/10.1093/hmg/ddg203
Spiteri, Elizabeth ; Babcock, Melanie ; Kashork, Catherine D. ; Wakui, Keiko ; Gogineni, Swarna ; Lewis, Debbie A. ; Williams, Kisa M. ; Minoshima, Shinsei ; Sasaki, Takashi ; Shimizu, Nobuyoshi ; Potocki, Lorraine ; Pulijaal, Venkat ; Shanske, Alan ; Shaffer, Lisa G. ; Morrow, Bernice E. / Frequent translocations occur between low copy repeats on chromosome 22q11.2 (LCR22s) and telomeric bands of partner chromosomes. In: Human Molecular Genetics. 2003 ; Vol. 12, No. 15. pp. 1823-1837.
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abstract = "The chromosome 22q11.2 region is susceptible to rearrangements, mediated by low copy repeats (LCR22s). Deletions and duplications are mediated by homologous recombination events between LCR22s. The recurrent balanced constitutional translocation t(11;22)(q23;q11) breakpoint occurs in an LCR22 and is mediated by double strand breaks in AT-rich palindromes on both chromosomes 11 and 22. Recently, two cases of a t(17;22)(q11;q11) were reported, mediated by a similar mechanism (21). Except for these constitutional translocations, the molecular basis for non-recurrent, reciprocal 22q11.2 translocations is not known. To determine whether there are specific mechanisms that could mediate translocations, we analyzed cell lines derived from 14 different individuals by genotyping and FISH mapping. Somatic cell hybrid analysis was carried out for four cell lines. In five cell lines, the translocation breakpoints occurred in the same LCR22 as for the t(11;22) translocation, suggesting that similar molecular mechanisms are responsible. An additional three occurred in other LCR22s, and six were in non-LCR22 regions, mostly in the proximal half of the 22q11.2 region. The translocation breakpoints on the partner chromosomes were all located in the telomeric bands, proximal to the most telomeric unique sequence probe, in eight cell lines and distal to those loci in six. Therefore, several of the breakpoints were found to occur in the vicinity of highly dynamic regions of the genome, 22q11.2 and telomeric bands. We hypothesize that these regions are more susceptible to breakage and repair, resulting in translocations.",
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T1 - Frequent translocations occur between low copy repeats on chromosome 22q11.2 (LCR22s) and telomeric bands of partner chromosomes

AU - Spiteri, Elizabeth

AU - Babcock, Melanie

AU - Kashork, Catherine D.

AU - Wakui, Keiko

AU - Gogineni, Swarna

AU - Lewis, Debbie A.

AU - Williams, Kisa M.

AU - Minoshima, Shinsei

AU - Sasaki, Takashi

AU - Shimizu, Nobuyoshi

AU - Potocki, Lorraine

AU - Pulijaal, Venkat

AU - Shanske, Alan

AU - Shaffer, Lisa G.

AU - Morrow, Bernice E.

PY - 2003/8/1

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N2 - The chromosome 22q11.2 region is susceptible to rearrangements, mediated by low copy repeats (LCR22s). Deletions and duplications are mediated by homologous recombination events between LCR22s. The recurrent balanced constitutional translocation t(11;22)(q23;q11) breakpoint occurs in an LCR22 and is mediated by double strand breaks in AT-rich palindromes on both chromosomes 11 and 22. Recently, two cases of a t(17;22)(q11;q11) were reported, mediated by a similar mechanism (21). Except for these constitutional translocations, the molecular basis for non-recurrent, reciprocal 22q11.2 translocations is not known. To determine whether there are specific mechanisms that could mediate translocations, we analyzed cell lines derived from 14 different individuals by genotyping and FISH mapping. Somatic cell hybrid analysis was carried out for four cell lines. In five cell lines, the translocation breakpoints occurred in the same LCR22 as for the t(11;22) translocation, suggesting that similar molecular mechanisms are responsible. An additional three occurred in other LCR22s, and six were in non-LCR22 regions, mostly in the proximal half of the 22q11.2 region. The translocation breakpoints on the partner chromosomes were all located in the telomeric bands, proximal to the most telomeric unique sequence probe, in eight cell lines and distal to those loci in six. Therefore, several of the breakpoints were found to occur in the vicinity of highly dynamic regions of the genome, 22q11.2 and telomeric bands. We hypothesize that these regions are more susceptible to breakage and repair, resulting in translocations.

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