Epigenetic regulation of individual modules of the immunoglobulin heavy chain locus 3' regulatory region

Barbara K. Birshtein

Research output: Contribution to journalArticle

24 Citations (Scopus)

Abstract

The Igh locus undergoes an amazing array of DNA rearrangements and modifications during B cell development. During early stages, the variable region gene is constructed from constituent variable (V), diversity (D), and joining (J) segments (VDJ joining). B cells that successfully express an antibody can be activated, leading to somatic hypermutation (SHM) focused on the variable region, and class switch recombination (CSR), which substitutes downstream constant region genes for the originally used Cμ constant region gene. Many investigators, ourselves included, have sought to understand how these processes specifically target the Igh locus and avoid other loci and potential deleterious consequences of malignant transformation. Our laboratory has concentrated on a complex regulatory region (RR) that is located downstream of Ca, the most 3' of the Igh constant region genes. The ∼40 kb 3' RR, which is predicted to serve as a downstream major regulator of the Igh locus, contains two distinct segments: an ∼28 kb region comprising four enhancers, and an adjacent ∼12 kb region containing multiple CTCF and Pax5 binding sites. Analysis of targeted mutations in mice by a number of investigators has concluded that the entire 3' RR enhancer region is essential for SHM and CSR (but not for VDJ joining) and for high levels of expression of multiple isotypes. The CTCF/Pax5 binding region is a candidate for influencing VDJ joining early in B cell development and serving as a potential insulator of the Igh locus. Components of the 3' RR are subject to a variety of epigenetic changes during B cell development, i.e., DNAse I hypersensitivity, histone modifications, and DNA methylation, in association with transcription factor binding. I propose that these changes provide a foundation by which regulatory elements in modules of the 3' RR function by interacting with each other and with target sequences of the Igh locus.

Original languageEnglish (US)
Article numberArticle 163
JournalFrontiers in Immunology
Volume5
Issue numberAPR
DOIs
StatePublished - 2014

Fingerprint

Immunoglobulin Heavy Chains
Nucleic Acid Regulatory Sequences
Epigenomics
B-Lymphocytes
Genes
Histone Code
Research Personnel
V(D)J Recombination
Gene Rearrangement
DNA Methylation
Genetic Recombination
Hypersensitivity
Transcription Factors
Binding Sites
Mutation
Antibodies

Keywords

  • Class switch recombination
  • CTCF
  • Enhancers
  • Immunoglobulin heavy chain gene locus
  • Insulators
  • Pax5
  • Somatic hypermutation

ASJC Scopus subject areas

  • Immunology
  • Immunology and Allergy

Cite this

Epigenetic regulation of individual modules of the immunoglobulin heavy chain locus 3' regulatory region. / Birshtein, Barbara K.

In: Frontiers in Immunology, Vol. 5, No. APR, Article 163, 2014.

Research output: Contribution to journalArticle

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