DNA condensation by polyamines

A laser light scattering study of structural effects

V. Vijayanathan, T. Thomas, A. Shirahata, T. J. Thomas

Research output: Contribution to journalArticle

167 Citations (Scopus)

Abstract

Polyamines such as spermidine and spermine are abundant in living cells and are believed to aid in the dense packaging of cellular DNA. DNA condensation is a prerequisite for the transport of gene vectors in living cells. To elucidate the structural features of polyamines governing DNA condensation, we studied the collapse of λ-DNA by spermine and a series of its homologues, H2N(CH2)3NH (CH2)n=2-12NH (CH2)3NH2 (n = 4 for spermine), using static and dynamic light scattering techniques. All polyamines provoked DNA condensation; however, their efficacy varied with the structural geometry of the polyamine. In 10 mM sodium cacodylate buffer, the EC50 values for DNA condensation were comparable (4 ± 1 μM) for spermine homologues with n = 4-8, whereas the lower and higher homologues provoked DNA condensation at higher EC50 values. The EC50 values increased with an increase in the monovalent ion (Na+) concentration in the buffer. The slope of a plot of log EC50(polyamine4+)] against log [Na+] was ∼ 1.5 for polyamines with even number values of n, whereas the slope value was ̃ 1 for compounds with odd number values of n. Dynamic light scattering measurements showed the presence of compact particles with hydrodynamic radii (Rh) of about 40-50 nm for compounds with n = 3-6. Rh increased with further increase in methylene chain length separating the secondary amino groups of the polyamines (Rh = 60-70 nm for n = 7 - 10 and > 100 nm for n = 11 and 12). Determination of the relative binding affinity of polyamines to DNA using an ethidium bromide displacement assay showed that homologues with n = 2 and 3 as well as those with n > 7 had significantly lower DNA binding affinity compared to spermine and homologues with n = 5 and 6. These data suggest that the chemical structure of isovalent polyamines exerts a profound influence on their ability to recognize and condense DNA, and on the size of the DNA condensates formed in aqueous solution.

Original languageEnglish (US)
Pages (from-to)13644-13651
Number of pages8
JournalBiochemistry
Volume40
Issue number45
DOIs
StatePublished - Nov 13 2001
Externally publishedYes

Fingerprint

Polyamines
Light scattering
Condensation
Lasers
Spermine
Light
DNA
Dynamic light scattering
Buffers
Cacodylic Acid
DNA Packaging
Cells
Spermidine
Ethidium
Hydrodynamics
Chain length
Assays
Sodium
Packaging
Ions

ASJC Scopus subject areas

  • Biochemistry

Cite this

Vijayanathan, V., Thomas, T., Shirahata, A., & Thomas, T. J. (2001). DNA condensation by polyamines: A laser light scattering study of structural effects. Biochemistry, 40(45), 13644-13651. https://doi.org/10.1021/bi010993t

DNA condensation by polyamines : A laser light scattering study of structural effects. / Vijayanathan, V.; Thomas, T.; Shirahata, A.; Thomas, T. J.

In: Biochemistry, Vol. 40, No. 45, 13.11.2001, p. 13644-13651.

Research output: Contribution to journalArticle

Vijayanathan, V, Thomas, T, Shirahata, A & Thomas, TJ 2001, 'DNA condensation by polyamines: A laser light scattering study of structural effects', Biochemistry, vol. 40, no. 45, pp. 13644-13651. https://doi.org/10.1021/bi010993t
Vijayanathan V, Thomas T, Shirahata A, Thomas TJ. DNA condensation by polyamines: A laser light scattering study of structural effects. Biochemistry. 2001 Nov 13;40(45):13644-13651. https://doi.org/10.1021/bi010993t
Vijayanathan, V. ; Thomas, T. ; Shirahata, A. ; Thomas, T. J. / DNA condensation by polyamines : A laser light scattering study of structural effects. In: Biochemistry. 2001 ; Vol. 40, No. 45. pp. 13644-13651.
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