Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes

Seth Blackshaw, Rebecca E. Fraioli, Takahisa Furukawa, Constance L. Cepko

Research output: Contribution to journalArticle

243 Citations (Scopus)

Abstract

To identify the full set of genes expressed by mammalian rods, we conducted serial analysis of gene expression (SAGE) by using libraries generated from mature and developing mouse retina. We identified 264 uncharacterized genes that were specific to or highly enriched in rods. Nearly half of all cloned human retinal disease genes are selectively expressed in rod photoreceptors. In silico mapping of the human orthologs of genes identified in our screen revealed that 86 map within intervals containing uncloned retinal disease genes, representing 37 different loci. We expect these data will allow identification of many disease genes, and that this approach may be useful for cloning genes involved in classes of disease where cell type-specific expression of disease genes is observed.

Original languageEnglish (US)
Pages (from-to)579-589
Number of pages11
JournalCell
Volume107
Issue number5
DOIs
StatePublished - Nov 30 2001
Externally publishedYes

Fingerprint

Retinal Diseases
Gene expression
Genes
Gene Expression
Retinal Rod Photoreceptor Cells
Cloning
Computer Simulation
Libraries
Retina
Organism Cloning

ASJC Scopus subject areas

  • Cell Biology
  • Molecular Biology

Cite this

Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes. / Blackshaw, Seth; Fraioli, Rebecca E.; Furukawa, Takahisa; Cepko, Constance L.

In: Cell, Vol. 107, No. 5, 30.11.2001, p. 579-589.

Research output: Contribution to journalArticle

Blackshaw, Seth ; Fraioli, Rebecca E. ; Furukawa, Takahisa ; Cepko, Constance L. / Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes. In: Cell. 2001 ; Vol. 107, No. 5. pp. 579-589.
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