TY - JOUR
T1 - COMPASS
T2 - An open-source, general-purpose software toolkit for computational psychiatry
AU - Yousefi, Ali
AU - Paulk, Angelique C.
AU - Basu, Ishita
AU - Dougherty, Darin D.
AU - Eskandar, Emad N.
AU - Eden, Uri T.
AU - Widge, Alik S.
N1 - Publisher Copyright:
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2018/7/27
Y1 - 2018/7/27
N2 - Mathematical modeling of behavior during psychophysical tasks, referred to as "computational psychiatry", could greatly improve our understanding of mental disorders. One barrier to broader adoption of computational methods is that they often require advanced programming skills. We developed the Computational Psychiatry Adaptive State-Space (COMPASS) toolbox, an open-source MATLAB-based software package. After specifying a few parameters in a small set of user-friendly functions, COMPASS allows the user to efficiently fit of a wide range of computational behavioral models. The model output can be analyzed as an experimental outcome or used as a regressor for neural data, and can be tested using goodness-of-fit methods. Here, we demonstrate that COMPASS can replicate two computational behavior analyses from different groups. COMPASS replicates and, in one case, slightly improves on the original modeling results. This flexible, general-purpose toolkit should accelerate the use of computational modeling in psychiatric neuroscience.
AB - Mathematical modeling of behavior during psychophysical tasks, referred to as "computational psychiatry", could greatly improve our understanding of mental disorders. One barrier to broader adoption of computational methods is that they often require advanced programming skills. We developed the Computational Psychiatry Adaptive State-Space (COMPASS) toolbox, an open-source MATLAB-based software package. After specifying a few parameters in a small set of user-friendly functions, COMPASS allows the user to efficiently fit of a wide range of computational behavioral models. The model output can be analyzed as an experimental outcome or used as a regressor for neural data, and can be tested using goodness-of-fit methods. Here, we demonstrate that COMPASS can replicate two computational behavior analyses from different groups. COMPASS replicates and, in one case, slightly improves on the original modeling results. This flexible, general-purpose toolkit should accelerate the use of computational modeling in psychiatric neuroscience.
KW - Cognitive Neuroscience
KW - Computational Methods
KW - Computational Psychiatry
KW - Mathematical Behavioral Analysis
KW - Open Source Software
KW - State-Space Modeling
UR - http://www.scopus.com/inward/record.url?scp=85094360058&partnerID=8YFLogxK
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U2 - 10.1101/377556
DO - 10.1101/377556
M3 - Article
AN - SCOPUS:85094360058
JO - Journal of Trace Elements in Medicine and Biology
JF - Journal of Trace Elements in Medicine and Biology
SN - 0946-672X
ER -