Chromatin immunoprecipitation in adult zebrafish red cells

Eirini Trompouki, Teresa V. Bowman, Anthony DiBiase, Yi Zhou, Leonard I. Zon

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Zebrafish has been used for many years as a model to study development and disease. The ability of zebrafish to produce thousand of embryos in a synchronous manner has made zebrafish an invaluable tool for genetic and chemical screens. Since its emergence as an important model organism the molecular tools for studying zebrafish have been limited. In this chapter, we describe a simple method to identify DNA binding sites and chromatin architecture in erythrocytes from adult zebrafish using chromatin immunoprecipitation coupled with next generation sequencing. This technique has been used extensively and successfully in other systems and it will be a useful tool for studying epigenetics in zebrafish.

Original languageEnglish (US)
Pages (from-to)341-352
Number of pages12
JournalMethods in Cell Biology
Volume104
DOIs
StatePublished - 2011
Externally publishedYes

Fingerprint

Chromatin Immunoprecipitation
Zebrafish
Molecular Models
Epigenomics
Chromatin
Embryonic Structures
Erythrocytes
Binding Sites
DNA

Keywords

  • Adult erythrocytes
  • Chromatin immunoprecipitation
  • High throughput sequencing
  • Transcription factor
  • Zebrafish

ASJC Scopus subject areas

  • Cell Biology

Cite this

Chromatin immunoprecipitation in adult zebrafish red cells. / Trompouki, Eirini; Bowman, Teresa V.; DiBiase, Anthony; Zhou, Yi; Zon, Leonard I.

In: Methods in Cell Biology, Vol. 104, 2011, p. 341-352.

Research output: Contribution to journalArticle

Trompouki, Eirini ; Bowman, Teresa V. ; DiBiase, Anthony ; Zhou, Yi ; Zon, Leonard I. / Chromatin immunoprecipitation in adult zebrafish red cells. In: Methods in Cell Biology. 2011 ; Vol. 104. pp. 341-352.
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