A comparative cDNA microarray analysis reveals a spectrum of genes regulated by Pax6 in mouse lens

Bharesh K. Chauhan, Nathan A. Reed, Ying Yang, Lukáš Čermák, Lixing Reneker, Melinda K. Duncan, Ales Cvekl

Research output: Contribution to journalArticle

59 Citations (Scopus)

Abstract

Background: Pax6 is a transcription factor that is required for induction, growth, and maintenance of the lens; however, few direct target genes of Pax6 are known. Results: In this report, we describe the results of a cDNA microarray analysis of lens transcripts from transgenic mice over-expressing Pax6 in lens fibre cells in order to narrow the field of potential direct Pax6 target genes. This study revealed that the transcript levels were significantly altered for 508 of the 9700 genes analysed, including five genes encoding the cell adhesion molecules β1-integrin, JAM1, L1 CAM, NCAM-140 and neogenin. Notably, comparisons between the genes differentially expressed in Pax6 heterozygous and Pax6 over-expressing lenses identified 13 common genes, including paralemmin, GDIβ, ATF1, Hrp12 and Brg1. Immunohistochemistry and Western blotting demonstrated that Brg1 is expressed in the embryonic and neonatal (2-week-old) but not in 14-week adult lenses, and confirmed altered expression in transgenic lenses over-expressing Pax6. Furthermore, EMSA demonstrated that the BRG1 promoter contains Pax6 binding sites, further supporting the proposition that it is directly regulated by Pax6. Conclusions: These results provide a list of genes with possible roles in lens biology and cataracts that are directly or indirectly regulated by Pax6.

Original languageEnglish (US)
Pages (from-to)1267-1283
Number of pages17
JournalGenes to Cells
Volume7
Issue number12
DOIs
StatePublished - Dec 1 2002

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Microarray Analysis
Oligonucleotide Array Sequence Analysis
Lenses
Genes
Guanine Nucleotide Dissociation Inhibitors
Neural Cell Adhesion Molecules
Cell Adhesion Molecules
Integrins
Cataract
Transgenic Mice
Transcription Factors
Western Blotting
Immunohistochemistry
Binding Sites
Maintenance
Growth

ASJC Scopus subject areas

  • Genetics
  • Cell Biology

Cite this

A comparative cDNA microarray analysis reveals a spectrum of genes regulated by Pax6 in mouse lens. / Chauhan, Bharesh K.; Reed, Nathan A.; Yang, Ying; Čermák, Lukáš; Reneker, Lixing; Duncan, Melinda K.; Cvekl, Ales.

In: Genes to Cells, Vol. 7, No. 12, 01.12.2002, p. 1267-1283.

Research output: Contribution to journalArticle

Chauhan, Bharesh K. ; Reed, Nathan A. ; Yang, Ying ; Čermák, Lukáš ; Reneker, Lixing ; Duncan, Melinda K. ; Cvekl, Ales. / A comparative cDNA microarray analysis reveals a spectrum of genes regulated by Pax6 in mouse lens. In: Genes to Cells. 2002 ; Vol. 7, No. 12. pp. 1267-1283.
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