Find Research outputs

Search results

• Article

  Transcriptional and metabolic signatures of Arabidopsis responses to chewing damage by an insect herbivore and bacterial infection and the consequences of their interaction

  Appel, H. M., Maqbool, S. B., Raina, S., Jagadeeswaran, G., Acharya, B. R., Hanley, J. C., Miller, K. P., Hearnes, L., Hearnes, L., Raina, R. & Schultz, J. C., Sep 17 2014, In: Frontiers in Plant Science. 5, SEP, 441.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  11 Scopus citations

• Transcriptional and posttranscriptional control of connexin mRNAs in periportal and pericentral rat hepatocytes

  Rosenberg, E., Spray, D. C. & Reid, L. M., 1992, In: European Journal of Cell Biology. 59, 1, p. 21-26 6 p.

  Research output: Contribution to journal › Article › peer-review
  37 Scopus citations

• Transcriptional and Posttranscriptional Effects of Dexamethasone on Albumin and Procollagen Messenger RNAs in Murine Schistosomiasis

  Weiner, F. R., Czaja, M. J., Giambrone, M. A., Takahashi, S., Biempica, L. & Zern, M. A., 1987, In: Biochemistry. 26, 6, p. 1557-1562 6 p.

  Research output: Contribution to journal › Article › peer-review
  49 Scopus citations

• Transcriptional and post-transcriptional regulation of extra macrochaetae during Drosophila adult peripheral neurogenesis

  Li, K. & Baker, N. E., May 1 2019, In: Developmental Biology. 449, 1, p. 41-51 11 p.

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Transcriptional and post-transcriptional regulation of spast, the gene most frequently mutated in hereditary spastic paraplegia

  Henson, B. J., Zhu, W., Hardaway, K., Wetzel, J. L., Stefan, M., Albers, K. M. & Nicholls, R. D., May 4 2012, In: PloS one. 7, 5, e36505.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  18 Scopus citations

• Transcriptional and translational landscape of Candida auris in response to caspofungin

  Zamith-Miranda, D., Amatuzzi, R. F., Munhoz da Rocha, I. F., Martins, S. T., Lucena, A. C. R., Vieira, A. Z., Trentin, G., Almeida, F., Rodrigues, M. L., Nakayasu, E. S., Nosanchuk, J. D. & Alves, L. R., Jan 2021, In: Computational and Structural Biotechnology Journal. 19, p. 5264-5277 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• Transcriptional attenuation in colon carcinoma cells in response to butyrate

  Daroqui, M. C. & Augenlicht, L. H., Oct 2010, In: Cancer Prevention Research. 3, 10, p. 1292-1302 11 p.

  Research output: Contribution to journal › Article › peer-review
  24 Scopus citations

• Transcriptional behavior of LCR enhancer elements integrated at the same chromosomal locus by recombinase-mediated cassette exchange

  Bouhassira, E. E., Westerman, K. & Leboulch, P., 1997, In: Blood. 90, 9, p. 3332-3344 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  108 Scopus citations

• Transcriptional burst fraction and size dynamics during lens fiber cell differentiation and detailed insights into the denucleation process

  Limi, S., Senecal, A., Coleman, R., Lopez-Jones, M., Guo, P., Polumbo, C., Singer, R. H., Skoultchi, A. I. & Cvekl, A., Aug 24 2018, In: Journal of Biological Chemistry. 293, 34, p. 13176-13190 15 p.

  Research output: Contribution to journal › Article › peer-review
  10 Scopus citations

• Transcriptional Changes in CD16+ Monocytes May Contribute to the Pathogenesis of COVID-19

  Chilunda, V., Martinez-Aguado, P., Xia, L. C., Cheney, L., Murphy, A., Veksler, V., Ruiz, V., Calderon, T. M. & Berman, J. W., May 24 2021, In: Frontiers in immunology. 12, 665773.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Transcriptional coactivator p300 stimulates cell type-specific gene expression in cardiac myocytes

  Hasegawa, K., Meyers, M. B. & Kitsis, R. N., Aug 8 1997, In: Journal of Biological Chemistry. 272, 32, p. 20049-20054 6 p.

  Research output: Contribution to journal › Article › peer-review
  46 Scopus citations

• Transcriptional complexes formed by NFAT dimers regulate the induction of T cell tolerance

  Soto-Nieves, N., Puga, I., Abe, B. T., Bandyopadhyay, S., Baine, I., Rao, A. & Macian, F., Apr 13 2009, In: Journal of Experimental Medicine. 206, 4, p. 867-876 10 p.

  Research output: Contribution to journal › Article › peer-review
  65 Scopus citations

• Transcriptional control of CBX5 by the RNA-binding proteins RBMX and RBMXL1 maintains chromatin state in myeloid leukemia

  Prieto, C., Nguyen, D. T. T., Liu, Z., Wheat, J., Perez, A., Gourkanti, S., Chou, T., Barin, E., Velleca, A., Rohwetter, T., Chow, A., Taggart, J., Savino, A. M., Hoskova, K., Dhodapkar, M., Schurer, A., Barlowe, T. S., Vu, L. P., Leslie, C., Steidl, U. & 2 others, Rabadan, R. & Kharas, M. G., Jul 2021, In: Nature Cancer. 2, 7, p. 741-757 17 p.

  Research output: Contribution to journal › Article › peer-review
  4 Scopus citations

• Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis

  Herrera-Vásquez, A., Carvallo, L., Blanco, F., Tobar, M., Villarroel-Candia, E., Vicente-Carbajosa, J., Salinas, P. & Holuigue, L., Jun 16 2015, In: Plant Molecular Biology Reporter. 33, 3, p. 624-637 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  35 Scopus citations

• Transcriptional control of neural function in C elegans

  Ruvkun, G., Sze, J. Y. & Hubert, O., Dec 1 1998, In: FASEB Journal. 12, 8, p. A1322

  Research output: Contribution to journal › Article › peer-review

• Transcriptional control of the iron-responsive fxbA gene by the mycobacterial regulator IdeR

  Dussurget, O., Timm, J., Gomez, M., Gold, B., Yu, S., Sabol, S. Z., Holmes, R. K., Jacobs, W. R. & Smith, I., Jun 1999, In: Journal of Bacteriology. 181, 11, p. 3402-3408 7 p.

  Research output: Contribution to journal › Article › peer-review
  79 Scopus citations

• Transcriptional control of the isoleucine-valine messenger RNA's in E. coli K-12

  Childs, G. J. & Freundlich, M., Sep 1 1975, In: MGG Molecular & General Genetics. 138, 3, p. 257-268 12 p.

  Research output: Contribution to journal › Article › peer-review
  8 Scopus citations

• Transcriptional control of the neuronal nicotinic acetylcholine receptor gene cluster by the β43' enhancer, Sp1, SCIP and ETS transcription factors

  Deneris, E. S., Francis, N., McDonough, J., Fyodorov, D., Miller, T. & Yang, X., Mar 30 2000, In: European Journal of Pharmacology. 393, 1-3, p. 69-74 6 p.

  Research output: Contribution to journal › Article › peer-review
  9 Scopus citations

• Transcriptional co-operativity between distant retinoic acid response elements in regulation of Cyp26A1 inducibility

  Loudig, O., MacLean, G. A., Dore, N. L., Luu, L. & Petkovich, M., Nov 15 2005, In: Biochemical Journal. 392, 1, p. 241-248 8 p.

  Research output: Contribution to journal › Article › peer-review
  101 Scopus citations

• Transcriptional deregulation of mutated BCL6 alleles by loss of negative autoregulation in diffuse large B cell lymphoma

  Pasqualucci, L., Migliazza, A., Hilda Ye, B. & Dalla-Favera, R., Jan 1 2003, In: Annals of the New York Academy of Sciences. 987, p. 314-315 2 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations

• Transcriptional diversity at the duplicated human CD8β loci

  Disanto, J. P., Smith, D., De Bruin, D., Lacy, E. & Flomenberg, N., Feb 1993, In: European Journal of Immunology. 23, 2, p. 320-326 7 p.

  Research output: Contribution to journal › Article › peer-review
  19 Scopus citations

• Transcriptional initiation and postinitiation effects of murine leukemia virus long terminal repeat R-region sequences

  Cupelli, L. A. & Lenz, J., 1991, In: Journal of virology. 65, 12, p. 6961-6968 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  12 Scopus citations

• Transcriptional interference among the murine β-like globin genes

  Hu, X., Eszterhas, S., Pallazzi, N., Bouhassira, E. E., Fields, J., Tanabe, O., Gerber, S. A., Bulger, M., Engel, J. D., Groudine, M. & Fiering, S., Mar 1 2007, In: Blood. 109, 5, p. 2210-2216 7 p.

  Research output: Contribution to journal › Article › peer-review
  26 Scopus citations

• Transcriptional interference by independently regulated genes occurs in any relative arrangement of the genes and is influenced by chromosomal integration position

  Eszterhas, S. K., Bouhassira, E. E., Martin, D. I. K. & Fiering, S., 2002, In: Molecular and cellular biology. 22, 2, p. 469-479 11 p.

  Research output: Contribution to journal › Article › peer-review
  134 Scopus citations

• Transcriptional mechanisms underlying lymphocyte tolerance

  Macián, F., García-Cózar, F., Im, S. H., Horton, H. F., Byrne, M. C. & Rao, A., Jun 14 2002, In: Cell. 109, 6, p. 719-731 13 p.

  Research output: Contribution to journal › Article › peer-review
  539 Scopus citations

• Transcriptional profile of the human pathogenic fungus Paracoccidioides lutzii in response to sulfamethoxazole

  Zambuzzi-Carvalho, P. F., Fernandes, A. G., Valadares, M. C., De Mello Tavares, P., Nosanchuk, J. D., De Almeida Soares, C. M. & Pereira, M., Jun 1 2015, In: Medical mycology. 53, 5, p. 477-492 16 p.

  Research output: Contribution to journal › Article › peer-review
  6 Scopus citations

• Transcriptional profiling identifies cyclin D1 as a critical downstream effector of mutant epidermal growth factor receptor signaling

  Kobayashi, S., Shimamura, T., Monti, S., Steidl, U., Hetherington, C. J., Lowell, A. M., Golub, T., Meyerson, M., Tenen, D. G., Shapiro, G. L. & Halmos, B., Dec 1 2006, In: Cancer research. 66, 23, p. 11389-11398 10 p.

  Research output: Contribution to journal › Article › peer-review
  97 Scopus citations

• Transcriptional Profiling Identifies the Signaling Axes of IGF and Transforming Growth Factor-β as Involved in the Pathogenesis of Osteosarcoma

  Yang, R., Piperdi, S., Zhang, Y., Zhu, W., Neophytou, N., Hoang, B. H., Mason, G., Geller, D., Dorfman, H., Meyers, P. A., Healey, J. H., Phinney, D. G. & Gorlick, R., Jan 1 2016, In: Clinical orthopaedics and related research. 474, 1, p. 178-189 12 p.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Transcriptional profiling of adult neural stem-like cells from the human brain

  Sandberg, C. J., Vik-Mo, E. O., Behnan, J., Helseth, E. & Langmoen, I. A., Dec 16 2014, In: PloS one. 9, 12, e114739.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  8 Scopus citations

• Transcriptional profiling of Plasmodium falciparum parasites from patients with severe malaria identifies distinct low vs. high parasitemic clusters

  Milner, D. A., Pochet, N., Krupka, M., Williams, C., Seydel, K., Taylor, T. E., van de Peer, Y., Regev, A., Wirth, D., Daily, J. P. & Mesirov, J. P., Jul 18 2012, In: PloS one. 7, 7, e40739.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  13 Scopus citations

• Transcriptional Pulsing of a Developmental Gene

  Chubb, J. R., Trcek, T., Shenoy, S. M. & Singer, R. H., May 23 2006, In: Current Biology. 16, 10, p. 1018-1025 8 p.

  Research output: Contribution to journal › Article › peer-review
  492 Scopus citations

• Transcriptional regulation by p53. Functional interactions among multiple regulatory domains

  Hsu, Y. S., Tang, F. M., Liu, W. L., Chuang, J. Y., Lai, M. Y. & Lin, Y. S., 1995, In: Journal of Biological Chemistry. 270, 12, p. 6966-6974 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  26 Scopus citations

• Transcriptional regulation of GLUT4 gene expression

  Olson, A. L. & Pessin, J. E., Apr 1996, In: Seminars in Cell and Developmental Biology. 7, 2, p. 287-293 7 p.

  Research output: Contribution to journal › Article › peer-review
  6 Scopus citations

• Transcriptional Regulation of Human Transforming Growth Factor-α in Astrocytes

  Karki, P., Johnson, J., Son, D. S., Aschner, M. & Lee, E., Mar 1 2017, In: Molecular Neurobiology. 54, 2, p. 964-976 13 p.

  Research output: Contribution to journal › Article › peer-review
  21 Scopus citations

• Transcriptional regulation of mouse alpha A-crystallin gene in a 148kb Cryaa BAC and its derivates

  Wolf, L., Yang, Y., Wawrousek, E. & Cvekl, A., 2008, In: BMC Developmental Biology. 8, 88.

  Research output: Contribution to journal › Article › peer-review
  17 Scopus citations

• Transcriptional regulation of mouse αB- and γF-crystallin genes in lens: Opposite promoter-specific interactions between Pax6 and large Maf transcription factors

  Yang, Y., Chauhan, B. K., Cveklova, K. & Cvekl, A., Nov 19 2004, In: Journal of Molecular Biology. 344, 2, p. 351-368 18 p.

  Research output: Contribution to journal › Article › peer-review
  52 Scopus citations

• Transcriptional regulation of multi-drug tolerance and antibiotic-induced responses by the histone-like protein Lsr2 in M. tuberculosis

  Colangeli, R., Helb, D., Vilchèze, C., Hazbón, M. H., Lee, C. G., Safi, H., Sayers, B., Sardone, I., Jones, M. B., Fleischmann, R. D., Peterson, S. N., Jacobs, W. R. & Alland, D., Jun 2007, In: PLoS pathogens. 3, 6, p. 780-793 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  90 Scopus citations

• Transcriptional regulation of neural stem cell expansion in adult hippocampus

  Guo, N., McDermott, K. D., Shih, Y. T., Zanga, H., Ghosh, D., Herber, C., Meara, W. R., Coleman, J., Zagouras, A., Wong, L. P., Sadreyev, R., Gonçalves, J. T. & Sahay, A., Jan 2022, In: eLife. 11, e72195.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of the androgen receptor cofactor androgen receptor trapped clone-27

  Nwachukwu, J. C., Li, W., Pineda-Torra, I., Hong, Y. H., Ruoff, R., Shapiro, E., Taneja, S. S., Logan, S. K. & Garabedian, M. J., Dec 2007, In: Molecular Endocrinology. 21, 12, p. 2864-2876 13 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Transcriptional regulation of the astrocytic excitatory amino acid transporter 1 (EAAT1) via NF-κB and Yin Yang 1 (YY1)

  Karki, P., Kim, C., Smith, K., Son, D. S., Aschner, M. & Lee, E., Sep 25 2015, In: Journal of Biological Chemistry. 290, 39, p. 23725-23737 13 p.

  Research output: Contribution to journal › Article › peer-review
  40 Scopus citations

• Transcriptional regulation of the human GLUT4 gene promoter in diabetic transgenic mice

  Olson, A. L. & Pessin, J. E., 1995, In: Journal of Biological Chemistry. 270, 40, p. 23491-23495 5 p.

  Research output: Contribution to journal › Article › peer-review
  59 Scopus citations

• Transcriptional regulation of the human tumor suppressor p14 ^ARF by E2F1, E2F2, E2F3, and Sp1-like factors

  Parisi, T., Pollice, A., Cristofano, A. D., Calabrò, V. & Mantia, G. L., 2002, In: Biochemical and Biophysical Research Communications. 291, 5, p. 1138-1145 8 p.

  Research output: Contribution to journal › Article › peer-review
  45 Scopus citations

• Transcriptional regulation of the mouse αA-crystallin gene: Activation dependent on a cyclic AMP-responsive element (DE1/CRE) and a Pax-6-binding site

  Cvekl, A., Kashanchi, F., Sax, C. M., Brady, J. N. & Piatigorsky, J., Feb 1995, In: Molecular and cellular biology. 15, 2, p. 653-660 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  106 Scopus citations

• Transcriptional regulation of the mouse αA-crystallin gene: Binding of USF to the -7/+5 region

  Sax, C. M., Cvekl, A. & Piatigorsky, J., Feb 7 1997, In: Gene. 185, 2, p. 209-216 8 p.

  Research output: Contribution to journal › Article › peer-review
  14 Scopus citations

• Transcriptional regulator Leu3 of Saccharomyces cerevisiae: Separation of activator and repressor functions

  Sze, J. Y., Remboutsika, E. & Kohlhaw, G. B., Sep 1993, In: Molecular and cellular biology. 13, 9, p. 5702-5709 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  26 Scopus citations

• Transcriptional regulators CITED2 and PU.1 cooperate in maintaining hematopoietic stem cells

  Mattes, K., Geugien, M., Korthuis, P. M., Brouwers-Vos, A. Z., Fehrmann, R. S. N., Todorova, T. I., Steidl, U., Vellenga, E. & Schepers, H., May 2019, In: Experimental Hematology. 73, p. 38-49.e7

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Transcriptional repression of Stat6-dependent interleukin-4-induced genes by BCL-6: Specific regulation of Iε transcription and immunoglobulin E switching

  Harris, M. B., Chang, C. C., Berton, M. T., Danial, N. N., Zhang, J., Kuehner, D., Ye, B. H., Kvatyuk, M., Pandolfi, P. P., Cattoretti, G., Dalla-Favera, R. & Rothman, P. B., Oct 1999, In: Molecular and cellular biology. 19, 10, p. 7264-7275 12 p.

  Research output: Contribution to journal › Article › peer-review
  163 Scopus citations

• Transcriptional signature with differential expression of BCL6 target genes accurately identifies BCL6-dependent diffuse large B cell lymphomas

  Polo, J. M., Juszczynski, P., Monti, S., Cerchietti, L., Ye, K., Greally, J. M., Shipp, M. & Melnick, A., Feb 27 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 9, p. 3207-3212 6 p.

  Research output: Contribution to journal › Article › peer-review
  106 Scopus citations

• Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

  Ludwig, L. S., Lareau, C. A., Bao, E. L., Nandakumar, S. K., Muus, C., Ulirsch, J. C., Chowdhary, K., Buenrostro, J. D., Mohandas, N., An, X., Aryee, M. J., Regev, A. & Sankaran, V. G., Jun 11 2019, In: Cell Reports. 27, 11, p. 3228-3240.e7

  Research output: Contribution to journal › Article › peer-review

  Open Access
  57 Scopus citations

• Transcriptional targeting of adenoviral vector through the CXCR4 tumor-specific promoter

  Zhu, Z. B., Makhija, S. K., Lu, B., Wang, M., Kaliberova, L., Liu, B., Rivera, A. A., Nettelbeck, D. M., Mahasreshti, P. J., Leath, C. A., Yamaoto, M., Alvarez, R. D. & Curiel, D. T., Apr 2004, In: Gene Therapy. 11, 7, p. 645-648 4 p.

  Research output: Contribution to journal › Article › peer-review
  52 Scopus citations