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• 2021

  Astrocytic transcription factor REST upregulates glutamate transporter EAAT2, protecting dopaminergic neurons from manganese-induced excitotoxicity

  Pajarillo, E., Digman, A., Nyarko-Danquah, I., Son, D. S., Soliman, K. F. A., Aschner, M. & Lee, E., Dec 1 2021, In: Journal of Biological Chemistry. 297, 6, 101372.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A structural-based machine learning method to classify binding affinities between TCR and peptide-MHC complexes

  Dhusia, K., Su, Z. & Wu, Y., Nov 2021, In: Molecular Immunology. 139, p. 76-86 11 p.

  Research output: Contribution to journal › Article › peer-review

• A structural model for the ligand binding of pneumococcal serotype 3 capsular polysaccharide-specific protective antibodies

  Ozdilek, A., Huang, J., Babb, R., Paschall, A. V., Middleton, D. R., Duke, J. A., Pirofski, L. A., Mousa, J. J. & Avci, F. Y., 2021, In: mBio. 12, 3, e00800-21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A suitable time point for quantifying the radiochemical purity of ²²⁵Ac-labeled radiopharmaceuticals

  Kelly, J. M., Amor-Coarasa, A., Sweeney, E., Wilson, J. J., Causey, P. W. & Babich, J. W., Dec 2021, In: EJNMMI Radiopharmacy and Chemistry. 6, 1, 38.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A survey of the global impact of COVID-19 on the practice of pediatric anesthesia: A study from the pediatric anesthesia COVID-19 Collaborative Group

  the Pediatric Anesthesia COVID-19 Collaborative, Jun 2021, In: Paediatric Anaesthesia. 31, 6, p. 720-729 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• A Sweep of Earth's Virome Reveals Host-Guided Viral Protein Structural Mimicry and Points to Determinants of Human Disease

  Lasso, G., Honig, B. & Shapira, S. D., Jan 20 2021, In: Cell Systems. 12, 1, p. 82-91.e3

  Research output: Contribution to journal › Article › peer-review

  Open Access
  5 Scopus citations

• A SWIFT Method for Handing off Obstetrical Patients on the Labor Floor

  Sheen, J. J., Reimers, L., Govindappagari, S., Ngai, I. M., Garretto, D., Donepudi, R., Tropper, P., Goffman, D., Dayal, A. K. & Bernstein, P. S., 2021, In: Journal of patient safety. 17, 6, p. 437-444 8 p.

  Research output: Contribution to journal › Article › peer-review

• ASXL1 mutations are associated with distinct epigenomic alterations that lead to sensitivity to venetoclax and azacytidine

  Rahmani, N. E., Ramachandra, N., Sahu, S., Gitego, N., Lopez, A., Pradhan, K., Bhagat, T. D., Gordon-Mitchell, S., Pena, B. R., Kazemi, M., Rao, K., Giricz, O., Maqbool, S. B., Olea, R., Zhao, Y., Zhang, J., Dolatshad, H., Tittrea, V., Tatwavedi, D., Singh, S. & 10 others, Lee, J., Sun, T., Steidl, U., Shastri, A., Inoue, D., Abdel-Wahab, O., Pellagatti, A., Gavathiotis, E., Boultwood, J. & Verma, A., Sep 2021, In: Blood cancer journal. 11, 9, 157.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• A Systematic Review of Treatment Strategies for the Prevention of Junctional Complications After Long-Segment Fusions in the Osteoporotic Spine

  Echt, M., Ranson, W., Steinberger, J., Yassari, R. & Cho, S. K., Jun 2021, In: Global Spine Journal. 11, 5, p. 792-801 10 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  3 Scopus citations

• A Systematic Review of Validity Evidence for the Fundamentals of Laparoscopic Surgery Examination in Gynecology

  Lerner, V., DeStephano, C., Ulrich, A., Han, E. S., LeClaire, E. & Chen, C. C. G., Jul 2021, In: Journal of Minimally Invasive Gynecology. 28, 7, p. 1313-1324 12 p.

  Research output: Contribution to journal › Review article › peer-review
  1 Scopus citations

• A systematic review on the metabolic effects of chlorpyrifos

  Farkhondeh, T., Mehrpour, O., Sadeghi, M., Aschner, M., Aramjoo, H., Roshanravan, B. & Samarghandian, S., 2021, (Accepted/In press) In: Reviews on Environmental Health.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  1 Scopus citations

• A tailored telehealth group tobacco cessation treatment program for people with HIV: Study protocol for a randomized controlled trial

  Marhefka, S., Lockhart, E., Chen, H., Meng, H., Reina Ortiz, M., Powell, B. & Shuter, J., Nov 2021, In: Contemporary Clinical Trials. 110, 106475.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Atogepant for the preventive treatment of migraine

  Ailani, J., Lipton, R. B., Goadsby, P. J., Guo, H., Miceli, R., Severt, L., Finnegan, M. & Trugman, J. M., Aug 19 2021, In: New England Journal of Medicine. 385, 8, p. 695-706 12 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• A tonic-clonic seizure at 27 weeks’ gestation

  Lambert, C., Anderson, C. & Wolfe, D., Jan 2021, In: NeoReviews. 22, 1, p. e61-e67

  Research output: Contribution to journal › Article › peer-review

• A Tool to Predict Readmission to the Intensive Care Unit in Surgical Critical Care Patients—The RISC Score

  Hammer, M., Grabitz, S. D., Teja, B., Wongtangman, K., Serrano, M., Neves, S., Siddiqui, S., Xu, X. & Eikermann, M., Oct 2021, In: Journal of Intensive Care Medicine. 36, 11, p. 1296-1304 9 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Atovaquone and berberine chloride reduce sars-cov-2 replication in vitro

  Rodriguez-Rodriguez, B. A., Noval, M. G., Kaczmarek, M. E., Jang, K. K., Thannickal, S. A., Kottkamp, A. C., Brown, R. S., Kielian, M., Cadwell, K. & Stapleford, K. A., Dec 2021, In: Viruses. 13, 12, 2437.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types

  Kozareva, V., Martin, C., Osorno, T., Rudolph, S., Guo, C., Vanderburg, C., Nadaf, N., Regev, A., Regehr, W. G. & Macosko, E., Oct 7 2021, In: Nature. 598, 7879, p. 214-219 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Auditory cues reveal intended movement information in middle frontal gyrus neuronal ensemble activity of a person with tetraplegia

  Hosman, T., Hynes, J. B., Saab, J., Wilcoxen, K. G., Buchbinder, B. R., Schmansky, N., Cash, S. S., Eskandar, E. N., Simeral, J. D., Franco, B., Kelemen, J., Vargas-Irwin, C. E. & Hochberg, L. R., Dec 2021, In: Scientific reports. 11, 1, 98.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• A unified model of human hemoglobin switching through single-cell genome editing

  Shen, Y., Verboon, J. M., Zhang, Y., Liu, N., Kim, Y. J., Marglous, S., Nandakumar, S. K., Voit, R. A., Fiorini, C., Ejaz, A., Basak, A., Orkin, S. H., Xu, J. & Sankaran, V. G., Dec 2021, In: Nature communications. 12, 1, 4991.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Author Correction: HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA) (Nature Communications, (2021), 12, 1, (165), 10.1038/s41467-020-20442-3)

  Kinloch, N. N., Ren, Y., Alberto, W. D. C., Dong, W., Khadka, P., Huang, S. H., Mota, T. M., Wilson, A., Shahid, A., Kirkby, D., Harris, M., Kovacs, C., Benko, E., Ostrowski, M. A., Del Rio Estrada, P. M., Wimpelberg, A., Cannon, C., Hardy, W. D., MacLaren, L., Goldstein, H. & 5 others, Brumme, C. J., Lee, G. Q., Lynch, R. M., Brumme, Z. L. & Jones, R. B., Dec 2021, In: Nature communications. 12, 1, 2958.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  1 Scopus citations

• Author Correction: Inherited causes of clonal haematopoiesis in 97,691 whole genomes (Nature, (2020), 586, 7831, (763-768), 10.1038/s41586-020-2819-2)

  NHLBI Trans-Omics for Precision Medicine Consortium, Mar 25 2021, In: Nature. 591, 7851, p. E27

  Research output: Contribution to journal › Comment/debate › peer-review
  2 Scopus citations

• Author Correction: COVID-19 vaccine guidance for patients with cancer participating in oncology clinical trials (Nature Reviews Clinical Oncology, (2021), 18, 5, (313-319), 10.1038/s41571-021-00487-z)

  the COVID19 and Cancer Clinical Trials Working Group, May 2021, In: Nature Reviews Clinical Oncology. 18, 5, p. 320 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  2 Scopus citations

• Author Correction: Intracellular mRNA transport and localized translation (Nature Reviews Molecular Cell Biology, (2021), 22, 7, (483-504), 10.1038/s41580-021-00356-8)

  Das, S., Vera Ugalde, M., Gandin, V., Singer, R. H. & Tutucci, E., Jul 2021, In: Nature Reviews Molecular Cell Biology. 22, 7, p. 505 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  1 Scopus citations

• Author Correction: Long-term behavioral and cell-type-specific molecular effects of early life stress are mediated by H3K79me2 dynamics in medium spiny neurons (Nature Neuroscience, (2021), 24, 5, (667-676), 10.1038/s41593-021-00814-8)

  Kronman, H., Torres-Berrío, A., Sidoli, S., Issler, O., Godino, A., Ramakrishnan, A., Mews, P., Lardner, C. K., Parise, E. M., Walker, D. M., van der Zee, Y. Y., Browne, C. J., Boyce, B. F., Neve, R., Garcia, B. A., Shen, L., Peña, C. J. & Nestler, E. J., May 2021, In: Nature Neuroscience. 24, 5, p. 753-754 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access
  1 Scopus citations

• Author Response: Characterizing Opioid Use in a US Population With Migraine: Results From the CaMEO Study

  Lipton, R. B., Buse, D. C. & Friedman, B. W., Apr 6 2021, In: Neurology. 96, 14, p. 686 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

• Authors' reply to the comment “High-dose, high-frequency infliximab: A novel treatment paradigm for hidradenitis suppurativa”

  Ghias, M. H., Johnston, A. D., Kutner, A. J., Micheletti, R. G., Hosgood, H. D. & Cohen, S. R., Apr 2021, In: Journal of the American Academy of Dermatology. 84, 4, p. e203-e204

  Research output: Contribution to journal › Letter › peer-review

  Open Access

• Author's response: On-admission parameters based prognostication in COVID-19: An important missing link…

  Oh, S. M. & Leff, J., Jul 2021, In: American Journal of Emergency Medicine. 45, p. 568 1 p.

  Research output: Contribution to journal › Letter › peer-review

• Authors Response

  Beasley, J. M., Rillamas-Sun, E., Tinker, L. F., Wylie-Rosett, J., Mossavar-Rahmani, Y., Datta, M., Caan, B. J. & LaCroix, A. Z., Feb 2021, In: Journal of the Academy of Nutrition and Dietetics. 121, 2, p. 210-212 3 p.

  Research output: Contribution to journal › Letter › peer-review

• Autoantibody-mediated impairment of DNASE1L3 activity in sporadic systemic lupus erythematosus

  Hartl, J., Serpas, L., Wang, Y., Rashidfarrokhi, A., Perez, O. A., Sally, B., Sisirak, V., Soni, C., hodadadi-Jamayran, A., Tsirigos, A., Caiello, I., Bracaglia, C., Volpi, S., Ghiggeri, G. M., Chida, A. S., Sanz, I., Kim, M. Y., Michael Belmont, H., Silverman, G. J., Clancy, R. M. & 3 others, Izmirly, P. M., Buyon, J. P. & Reizis, B., May 3 2021, In: Journal of Experimental Medicine. 218, 5, e20201138.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• Automated multi-class brain tumor types detection by extracting RICA based features and employing machine learning techniques

  Anjum, S., Hussain, L., Ali, M., Abbasi, A. A. & Duong, T. Q., 2021, In: Mathematical Biosciences and Engineering. 18, 3, p. 2882-2908 27 p.

  Research output: Contribution to journal › Article › peer-review

• Automatic localization of the prostatic urethra for image guided radiation therapy

  Nasser, N. J., Klein, J., Fenig, E. & Agbarya, A., Sep 2021, In: Technical Innovations and Patient Support in Radiation Oncology. 19, p. 1-6 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Automatic upper airway segmentation in static and dynamic MRI via anatomy-guided convolutional neural networks

  Xie, L., Udupa, J. K., Tong, Y., Torigian, D. A., Huang, Z., Kogan, R. M., Wootton, D., Choy, K. R., Sin, S., Wagshul, M. E. & Arens, R., 2021, (Accepted/In press) In: Medical physics.

  Research output: Contribution to journal › Article › peer-review

• Automatic upper airway segmentation in static and dynamic MRI via deep convolutional neural networks

  Xie, L., Udupa, J. K., Tong, Y., Torigian, D. A., Huang, Z., Kogan, R. M., Nathan, J. B., Wootton, D., Choy, K., Sin, S., Wagshul, M. E. & Arens, R., 2021, Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. S. & Krol, A. (eds.). SPIE, 116000J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11600).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
  1 Scopus citations

• Autophagy and the hallmarks of aging

  Kaushik, S., Tasset, I., Arias, E., Pampliega, O., Wong, E., Martinez-Vicente, M. & Cuervo, A. M., Dec 2021, In: Ageing Research Reviews. 72, 101468.

  Research output: Contribution to journal › Review article › peer-review

• Autophagy in major human diseases

  Klionsky, D. J., Petroni, G., Amaravadi, R. K., Baehrecke, E. H., Ballabio, A., Boya, P., Bravo-San Pedro, J. M., Cadwell, K., Cecconi, F., Choi, A. M. K., Choi, M. E., Chu, C. T., Codogno, P., Colombo, MI., Cuervo, A. M., Deretic, V., Dikic, I., Elazar, Z., Eskelinen, E. L., Fimia, G. M. & 39 others, Gewirtz, D. A., Green, D. R., Hansen, M., Jäättelä, M., Johansen, T., Juhász, G., Karantza, V., Kraft, C., Kroemer, G., Ktistakis, N. T., Kumar, S., Lopez-Otin, C., Macleod, K. F., Madeo, F., Martinez, J., Meléndez, A., Mizushima, N., Münz, C., Penninger, J. M., Perera, RM., Piacentini, M., Reggiori, F., Rubinsztein, D. C., Ryan, KM., Sadoshima, J., Santambrogio, L., Scorrano, L., Simon, H. U., Simon, A. K., Simonsen, A., Stolz, A., Tavernarakis, N., Tooze, S. A., Yoshimori, T., Yuan, J., Yue, Z., Zhong, Q., Galluzzi, L. & Pietrocola, F., Oct 1 2021, In: EMBO Journal. 40, 19, e108863.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  13 Scopus citations

• A vote for the full ticket

  Rego, S. A. & Alpert, J. E., Feb 2021, In: Bipolar Disorders. 23, 1, p. 88-89 2 p.

  Research output: Contribution to journal › Comment/debate › peer-review

• Awareness and Acceptability of Undetectable = Untransmittable Among a U.S. National Sample of HIV-Negative Sexual and Gender Minorities

  Carneiro, P. B., Westmoreland, D. A., Patel, V. V. & Grov, C., Feb 2021, In: AIDS and Behavior. 25, 2, p. 634-644 11 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• A workflow for simultaneous DNA copy number and methylome analysis of inner cell mass and trophectoderm cells from human blastocysts

  Olcha, M., Dong, X., Feil, H., Hao, X., Lee, M., Jindal, S., Buyuk, E. & Vijg, J., Jun 2021, In: Fertility and sterility. 115, 6, p. 1533-1540 8 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• A workshop on cognitive aging and impairment in the 9/11-exposed population

  Daniels, R. D., Clouston, S. A. P., Hall, C. B., Anderson, K. R., Bennett, D. A., Bromet, E. J., Calvert, G. M., Carreón, T., Dekosky, S. T., Diminich, E. D., Finch, C. E., Gandy, S., Kreisl, W. C., Kritikos, M., Kubale, T. L., Mielke, M. M., Peskind, E. R., Raskind, M. A., Richards, M., Sano, M. & 6 others, Santiago-Colón, A., Sloan, R. P., Spiro, A., Vasdev, N., Luft, B. J. & Reissman, D. B., Jan 2 2021, In: International journal of environmental research and public health. 18, 2, p. 1-24 24 p., 681.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  4 Scopus citations

• A Young Patient with Painless Neck Swelling

  Mei, J., Bello, J. A. & Shifteh, K., Jan 2021, In: JAMA Otolaryngology - Head and Neck Surgery. 147, 1, p. 95-96 2 p.

  Research output: Contribution to journal › Short survey › peer-review

• B7-H3 and PD-L1 Expression Are Prognostic Biomarkers in a Multi-racial Cohort of Patients with Colorectal Cancer

  Zhang, W., Acuna-Villaorduna, A., Kuan, K., Gupta, S., Hu, S., Ohaegbulam, K., Albanese, J., Kaumaya, M., Levy, R., Hwang, R. R., Zang, X., Lin, J., Liu, Q., Maitra, R. & Goel, S., Jun 2021, In: Clinical colorectal cancer. 20, 2, p. 161-169 9 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• B7 immune-checkpoints as targets for the treatment of neuroendocrine tumors

  Yuan, Z., Gardiner, J. C., Maggi, E. C., Huang, S., Adem, A., Bagdasarov, S., Li, G., Lee, S., Slegowski, D., Exarchakis, A., Howe, J. R., Lattime, E. C., Zang, X. & Libutti, S. K., Feb 1 2021, In: Endocrine-Related Cancer. 28, 2, p. 135-149 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• B7 score and T cell infiltration stratify immune status in prostate cancer

  Zhou, Q., Li, K., Lai, Y., Yao, K., Wang, Q., Zhan, X., Peng, S., Cai, W., Yao, W., Zang, X., Xu, K., Huang, J. & Huang, H., Aug 20 2021, In: Journal for ImmunoTherapy of Cancer. 9, 8, e002455.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Bacterial and fungal coinfections in COVID-19 patients hospitalized during the New York City pandemic surge

  Nori, P., Cowman, K., Chen, V., Bartash, R., Szymczak, W., Madaline, T. F., Punjabi Katiyar, C., Jain, R., Aldrich, M., Weston, G., Gialanella, P., Corpuz, M., Gendlina, I. & Guo, Y., Jan 2021, In: Infection Control and Hospital Epidemiology. 42, 1, p. 84-88 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  58 Scopus citations

• Bacterial infections in lung transplantation

  McCort, M., MacKenzie, E., Pursell, K. & Pitrak, D., Nov 2021, In: Journal of Thoracic Disease. 13, 11, p. 6654-6672 19 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Bacterial Swarmers Enriched During Intestinal Stress Ameliorate Damage

  De, A., Chen, W., Li, H., Wright, J. R., Lamendella, R., Lukin, D. J., Szymczak, W. A., Sun, K., Kelly, L., Ghosh, S., Kearns, D. B., He, Z., Jobin, C., Luo, X., Byju, A., Chatterjee, S., San Yeoh, B., Vijay-Kumar, M., Tang, J. X., Prajapati, M. & 2 others, Bartnikas, T. B. & Mani, S., Jul 2021, In: Gastroenterology. 161, 1, p. 211-224 14 p.

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Balloon-expandable versus self-expandable valves in transcatheter aortic valve implantation: Complications and outcomes from a large international patient cohort

  van Nieuwkerk, A. C., Santos, R. B., Andraka, L., Tchetche, D., de Brito, F. S., Barbanti, M., Kornowski, R., Latib, A., D’onofrio, A., Ribichini, F., Ten, F., Dumonteil, N., Baan, J., Piek, J. J., Abizaid, A., Sartori, S., D’errigo, P., Tarantini, G., Lunardi, M., Orvin, K. & 6 others, Pagnesi, M., Nogales-Asensio, J. M., Ghattas, A., Dangas, G., Mehran, R. & Delewi, R., Sep 2021, In: Journal of Clinical Medicine. 10, 17, 4005.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Bardet-Biedl syndrome proteins regulate intracellular signaling and neuronal function in patient-specific iPSC-derived neurons

  Wang, L., Liu, Y., Stratigopoulos, G., Panigrahi, S., Sui, L., Zhang, Y., Leduc, C. A., Glover, H. J., De Rosa, M. C., Burnett, L. C., Williams, D. J., Shang, L., Goland, R., Tsang, S. H., Wardlaw, S., Egli, D., Zheng, D., Doege, C. A. & Leibel, R. L., Apr 15 2021, In: Journal of Clinical Investigation. 131, 8, e146287.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• Bariatric Surgery for Congestive Heart Failure Patients Improves Access to Transplantation and Long-term Survival

  Choudhury, R. A., Foster, M., Hoeltzel, G., Moore, H. B., Yaffe, H., Yoeli, D., Prins, K., Ghincea, C., Vigneshwar, N., Dumon, K. R., Rame, J. E., Conzen, K. D., Pomposelli, J. J., Pomfret, E. A. & Nydam, T. L., Apr 2021, In: Journal of Gastrointestinal Surgery. 25, 4, p. 926-931 6 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Barriers and Facilitators to Implementing Bundled Acupuncture and Yoga Therapy to Treat Chronic Pain in Community Healthcare Settings: A Feasibility Pilot

  Anderson, B. J., Meissner, P., Mah, D. M., Nielsen, A., Moonaz, S., McKee, M. DI., Kligler, B., Milanes, M., Guerra, H. & Teets, R., Jun 2021, In: Journal of Alternative and Complementary Medicine. 27, 6, p. 496-505 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations