• 852 Citations
  • 13 h-Index
20102020

Research output per year

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Publications

  • 852 Citations
  • 13 h-Index
  • 31 Article
  • 3 Comment/debate
  • 2 Letter
  • 2 Review article
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Article
2020
Open Access
2019

Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance

Chen, K., Luan, X., Liu, Q., Wang, J., Chang, X., Snijders, A. M., Mao, J. H., Secombe, J., Dan, Z., Chen, J. H., Wang, Z., Dong, X., Qiu, C., Chang, X., Zhang, D., Celniker, S. E. & Liu, X., Apr 10 2019, In : Cell Host and Microbe. 25, 4, p. 537-552.e8

Research output: Contribution to journalArticle

10 Scopus citations
Open Access
20 Scopus citations
2018

Bleomycin-induced genome structural variations in normal, non-tumor cells

Quispe-Tintaya, W., Lee, M., Dong, X., Weiser, D. A., Vijg, J. & Maslov, A. Y., Dec 1 2018, In : Scientific reports. 8, 1, 16523.

Research output: Contribution to journalArticle

1 Scopus citations

Development of a method to implement whole-genome bisulfite sequencing of cfDNA from cancer patients and a mouse tumor model

Maggi, E. C., Gravina, S., Cheng, H., Piperdi, B., Yuan, Z., Dong, X., Libutti, S. K., Vijg, J. & Montagna, C., Jan 23 2018, In : Frontiers in Genetics. 9, JAN, 6.

Research output: Contribution to journalArticle

7 Scopus citations

Global, integrated analysis of methylomes and transcriptomes from laser capture microdissected bronchial and alveolar cells in human lung

Dong, X., Shi, M., Lee, M., Toro, R., Gravina, S., Han, W., Yasuda, S., Wang, T., Zhang, Z., Vijg, J., Suh, Y. & Spivack, S. D., Mar 4 2018, In : Epigenetics. 13, 3, p. 264-274 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Multiple transcription factors contribute to inter-chromosomal interaction in yeast

Dai, Y., Li, C., Pei, G., Dong, X., Ding, G., Zhao, Z., Li, Y. & Jia, P., Dec 21 2018, In : BMC Systems Biology. 12, 140.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2017

Accurate identification of single-nucleotide variants in whole-genome-amplified single cells

Dong, X., Zhang, L., Milholland, B., Lee, M., Maslov, A. Y., Wang, T. & Vijg, J., Mar 20 2017, (Accepted/In press) In : Nature Methods.

Research output: Contribution to journalArticle

47 Scopus citations

Analysis of individual cells identifies cell-to-cell variability following induction of cellular senescence

Wiley, C. D., Flynn, J. M., Morrissey, C., Lebofsky, R., Shuga, J., Dong, X., Unger, M. A., Vijg, J., Melov, S. & Campisi, J., Oct 2017, In : Aging cell. 16, 5, p. 1043-1050 8 p.

Research output: Contribution to journalArticle

40 Scopus citations

"best-Guess" MRAD Provides Robust Evidence for a Limit to Human Lifespan: Reply to de Grey (Rejuvenation Res. 2017;20:261-262)

Milholland, B., Dong, X. & Vijg, J., Oct 1 2017, In : Rejuvenation Research. 20, 5, p. 437-440 4 p.

Research output: Contribution to journalArticle

4 Scopus citations

Differences between germline and somatic mutation rates in humans and mice

Milholland, B., Dong, X., Zhang, L., Hao, X., Suh, Y. & Vijg, J., May 9 2017, In : Nature communications. 8, 15183.

Research output: Contribution to journalArticle

91 Scopus citations

Dong et al. reply

Dong, X., Milholland, B. & Vijg, J., Jun 28 2017, In : Nature. 546, 7660, p. E12

Research output: Contribution to journalArticle

Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation

Yu, B., Dong, X., Gravina, S., Kartal, Ö., Schimmel, T., Cohen, J., Tortoriello, D., Zody, R., Hawkins, R. D. & Vijg, J., Jul 11 2017, In : Stem Cell Reports. 9, 1, p. 397-407 11 p.

Research output: Contribution to journalArticle

26 Scopus citations
2016

CisASE: A likelihood-based method for detecting putative cis-regulated allele-specific expression in RNA sequencing data

Liu, Z., Gui, T., Wang, Z., Li, H., Fu, Y., Dong, X. & Li, Y., Nov 1 2016, In : Bioinformatics. 32, 21, p. 3291-3297 7 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Evidence for a limit to human lifespan

Dong, X., Milholland, B. & Vijg, J., Jan 1 2016, In : Nature. 538, 7624, p. 257-259 3 p.

Research output: Contribution to journalArticle

161 Scopus citations

Single-cell genome-wide bisulfite sequencing uncovers extensive heterogeneity in the mouse liver methylome

Gravina, S., Dong, X., Yu, B. & Vijg, J., Jul 5 2016, In : Genome biology. 17, 1, 150.

Research output: Contribution to journalArticle

49 Scopus citations
2015

Genetic evidence for common pathways in human age-related diseases

Johnson, S. C., Dong, X., Vijg, J. & Suh, Y., Oct 1 2015, In : Aging cell. 14, 5, p. 809-817 9 p.

Research output: Contribution to journalArticle

35 Scopus citations

Identification of hepatocellular carcinoma-related genes with a machine learning and network analysis

Gui, T., Dong, X., Li, R., Li, Y. & Wang, Z., Jan 1 2015, In : Journal of Computational Biology. 22, 1, p. 63-71 9 p.

Research output: Contribution to journalArticle

35 Scopus citations
2014

Comparing computational methods for identification of allele-specific expression based on next generation sequencing data

Liu, Z., Yang, J., Xu, H., Li, C., Wang, Z., Li, Y., Dong, X. & Li, Y., Nov 1 2014, In : Genetic Epidemiology. 38, 7, p. 591-598 8 p.

Research output: Contribution to journalArticle

8 Scopus citations
Open Access
3 Scopus citations

Investigating co-evolution of functionally associated phosphosites in human

Liu, Z., Zheng, G., Dong, X., Wang, Z., Ying, B., Zhong, Y. & Li, Y., Jan 1 2014, In : Molecular Genetics and Genomics. p. 1217-1223 7 p.

Research output: Contribution to journalArticle

The 3DGD: A database of genome 3D structure

Li, C., Dong, X., Fan, H., Wang, C., Ding, G. & Li, Y., Jun 1 2014, In : Bioinformatics. 30, 11, p. 1640-1642 3 p.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations
2013

A computational study identifies HIV progression-related genes using mRMR and shortest path tracing

Chengcheng, M., Dong, X., Li, R. & Liu, L., Nov 11 2013, In : PloS one. 8, 11, e78057.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans

Li, H., Gan, W., Lu, L., Dong, X., Han, X., Hu, C., Yang, Z., Sun, L., Bao, W., Li, P., He, M., Sun, L., Wang, Y., Zhu, J., Ning, Q., Tang, Y., Zhang, R., Wen, J., Wang, D., Zhu, X. & 18 others, Guo, K., Zuo, X., Guo, X., Yang, H., Zhou, X., Zhang, X., Qi, L., Loos, R. J. F., Hu, F. B., Wu, T., Liu, Y., Liu, L., Yang, Z., Hu, R., Jia, W., Ji, L., Li, Y. & Lin, X., Jan 1 2013, In : Diabetes. 62, 1, p. 291-298 8 p.

Research output: Contribution to journalArticle

Open Access
108 Scopus citations

Effects of smoking and smoking cessation on human serum metabolite profile: Results from the KORA cohort study

Xu, T., Holzapfel, C., Dong, X., Bader, E., Yu, Z., Prehn, C., Perstorfer, K., Jaremek, M., Roemisch-Margl, W., Rathmann, W., Li, Y., Wichmann, H. E., Wallaschofski, H., Ladwig, K. H., Theis, F., Suhre, K., Adamski, J., Illig, T., Peters, A. & Wang-Sattler, R., Mar 4 2013, In : BMC Medicine. 11, 1, 60.

Research output: Contribution to journalArticle

Open Access
68 Scopus citations

Evaluating coverage of exons by HapMap SNPs

Dong, X., Zhong, T., Xu, T., Xia, Y., Li, B., Li, C., Yuan, L., Ding, G. & Li, Y., Jan 1 2013, In : Genomics. 101, 1, p. 20-23 4 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

The de novo sequence origin of two long non-coding genes from an inter-genic region

Dai, Y., Li, S., Dong, X., Sun, H., Li, C., Liu, Z., Ying, B., Ding, G. & Li, Y., Dec 9 2013, In : BMC Genomics. 14, SUPP 8, S6.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations
2011

Crosstissue coexpression network of aging

Huang, T., Zhang, J., Xie, L., Dong, X., Zhang, L., Cai, Y. D. & Li, Y. X., Oct 1 2011, In : OMICS A Journal of Integrative Biology. 15, 10, p. 665-671 7 p.

Research output: Contribution to journalArticle

12 Scopus citations
2010

Comparing the retention mechanisms of tandem duplicates and retrogenes in human and mouse genomes

Wang, Z., Dong, X., Ding, G. & Li, Y., Dec 1 2010, In : Genetics Selection Evolution. 42, 1, 24.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Human transcriptional interactome of chromatin contribute to gene co-expression

Dong, X., Li, C., Chen, Y., Ding, G. & Li, Y., Dec 14 2010, In : BMC Genomics. 11, 1, 704.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Prediction of deleterious non-synonymous SNPs based on protein interaction network and hybrid properties

Huang, T., Wang, P., Ye, Z., Xu, H., He, Z., Feng, K., Hu, L., Cui, W., Wang, K., Dong, X., Xie, L., Kong, X., Cai, Y. D. & Li, Y., Aug 20 2010, In : PloS one. 5, 7, e11900.

Research output: Contribution to journalArticle

Open Access
69 Scopus citations