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19962021

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  • 2021

    Computational identification of variables in neonatal vocalizations predictive for postpubertal social behaviors in a mouse model of 16p11.2 deletion

    Nakamura, M., Ye, K., e Silva, M. B., Yamauchi, T., Hoeppner, D. J., Fayyazuddin, A., Kang, G., Yuda, E. A., Nagashima, M., Enomoto, S., Hiramoto, T., Sharp, R., Kaneko, I., Tajinda, K., Adachi, M., Mihara, T., Tokuno, S., Geyer, M. A., Broin, P., Matsumoto, M. & 1 others, Hiroi, N., 2021, (Accepted/In press) In: Molecular Psychiatry.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Diagnostic significance of the CT rim sign in cases of gangrenous cholecystitis

    Erlichman, D. B., Lipman, J. N., In, H., Ye, K., Lin, J. & Goldman, I., May 2021, In: Clinical Imaging. 73, p. 53-56 4 p.

    Research output: Contribution to journalArticlepeer-review

  • Framing potential for adverse effects of repetitive subconcussive impacts in soccer in the context of athlete and non-athlete controls

    Strauss, S. B., Fleysher, R., Ifrah, C., Hunter, L. E., Ye, K., Lipton, R. B., Zimmerman, M. E., Kim, M., Stewart, W. F. & Lipton, M. L., Apr 2021, In: Brain Imaging and Behavior. 15, 2, p. 882-895 14 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Safety and efficacy of image-guided retrocalcaneal bursa corticosteroid injection for the treatment of retrocalcaneal bursitis

    Boone, S. L., Uzor, R., Walter, E., Elsinger, E., Catanese, D., Ye, K. & Goldberg-Stein, S., 2021, (Accepted/In press) In: Skeletal Radiology.

    Research output: Contribution to journalArticlepeer-review

  • 2020

    Impact of Patient-Centered Care on the Patient Experience in Nuclear Medicine

    Berman, J., Moadel, R. M., Goldman-Yassen, A. E., Abraham, T., Ye, K., Volansky, J. & Goldberg-Stein, S., Sep 1 2020, In: Current Problems in Diagnostic Radiology. 49, 5, p. 326-332 7 p.

    Research output: Contribution to journalArticlepeer-review

  • Open Access
    19 Scopus citations
  • Open Access
    1 Scopus citations
  • Structural refinement of the tubulin ligand (+)-Discodermolide to attenuate chemotherapy-mediated senescence

    Guo, B., Rodriguez-Gabin, A., Prota, A. E., Mühlethaler, T., Zhang, N., Ye, K., Steinmetz, M. O., Horwitz, S. B., Smith, A. B. & McDaid, H. M., 2020, In: Molecular Pharmacology. 98, 2, p. 156-167 12 p.

    Research output: Contribution to journalArticlepeer-review

  • Survival Disparities in Black Patients With EGFR-mutated Non–small-cell Lung Cancer

    Cheng, H., Hosgood, H. D., Deng, L., Ye, K., Su, C., Sharma, J., Yang, Y., Halmos, B. & Perez-Soler, R., Mar 2020, In: Clinical lung cancer. 21, 2, p. 177-185 9 p.

    Research output: Contribution to journalArticlepeer-review

    1 Scopus citations
  • 2019

    A meta-analysis of genome-wide association studies identifies multiple longevity genes

    Deelen, J., Evans, D. S., Arking, D. E., Tesi, N., Nygaard, M., Liu, X., Wojczynski, M. K., Biggs, M. L., van der Spek, A., Atzmon, G., Ware, E. B., Sarnowski, C., Smith, A. V., Seppälä, I., Cordell, H. J., Dose, J., Amin, N., Arnold, A. M., Ayers, K. L., Barzilai, N. & 64 others, Becker, E. J., Beekman, M., Blanché, H., Christensen, K., Christiansen, L., Collerton, J. C., Cubaynes, S., Cummings, S. R., Davies, K., Debrabant, B., Deleuze, J. F., Duncan, R., Faul, J. D., Franceschi, C., Galan, P., Gudnason, V., Harris, T. B., Huisman, M., Hurme, M. A., Jagger, C., Jansen, I., Jylhä, M., Kähönen, M., Karasik, D., Kardia, S. L. R., Kingston, A., Kirkwood, T. B. L., Launer, L. J., Lehtimäki, T., Lieb, W., Lyytikäinen, L. P., Martin-Ruiz, C., Min, J., Nebel, A., Newman, A. B., Nie, C., Nohr, E. A., Orwoll, E. S., Perls, T. T., Province, M. A., Psaty, B. M., Raitakari, O. T., Reinders, M. J. T., Robine, J. M., Rotter, J. I., Sebastiani, P., Smith, J., Sørensen, T. I. A., Taylor, K. D., Uitterlinden, A. G., van der Flier, W., van der Lee, S. J., van Duijn, C. M., van Heemst, D., Vaupel, J. W., Weir, D., Ye, K., Zeng, Y., Zheng, W., Holstege, H., Kiel, D. P., Lunetta, K. L., Slagboom, P. E. & Murabito, J. M., Dec 1 2019, In: Nature communications. 10, 1, 3669.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    48 Scopus citations
  • Diagnostic yield of head CT in pediatric emergency department patients with acute psychosis or hallucinations

    Cunqueiro, A., Durango, A., Fein, D. M., Ye, K. & Scheinfeld, M. H., Feb 7 2019, In: Pediatric radiology. 49, 2, p. 240-244 5 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Diffusion Tensor Imaging of the Evolving Response to Mild Traumatic Brain Injury in Rats

    Hoogenboom, W. S., Rubin, T. G., Ye, K., Cui, M. H., Branch, K. C., Liu, J., Branch, C. A. & Lipton, M. L., Jul 1 2019, In: Journal of Experimental Neuroscience. 13

    Research output: Contribution to journalArticlepeer-review

    Open Access
    9 Scopus citations
  • Genetic variants associated with FDNY WTC-related sarcoidosis

    Cleven, K. L., Ye, K., Zeig-Owens, R., Hena, K. M., Montagna, C., Shan, J., Hosgood, H. D., Jaber, N., Weiden, M. D., Colbeth, H. L., Goldfarb, D. G., Spivack, S. D. & Prezant, D. J., May 2 2019, In: International journal of environmental research and public health. 16, 10, 1830.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    4 Scopus citations
  • Multi-modal neuroimaging of dual-task walking: Structural MRI and fNIRS analysis reveals prefrontal grey matter volume moderation of brain activation in older adults

    Wagshul, M. E., Lucas, M., Ye, K., Izzetoglu, M. & Holtzer, R., Apr 1 2019, In: NeuroImage. 189, p. 745-754 10 p.

    Research output: Contribution to journalArticlepeer-review

    19 Scopus citations
  • The effect of fear of falling on prefrontal cortex activation and efficiency during walking in older adults

    Holtzer, R., Kraut, R., Izzetoglu, M. & Ye, K., Feb 15 2019, In: GeroScience. 41, 1, p. 89-100 12 p.

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • The nutritional environment determines which and how intestinal stem cells contribute to homeostasis and tumorigenesis

    Li, W., Zimmerman, S. E., Peregrina, K., Houston, M., Mayoral, J., Zhang, J., Maqbool, S., Zhang, Z., Cai, Y., Ye, K. & Augenlicht, L. H., Aug 22 2019, In: Carcinogenesis. 40, 8, p. 937-946 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    8 Scopus citations
  • Ultra-High-Frequency Reprogramming of Individual Long-Term Hematopoietic Stem Cells Yields Low Somatic Variant Induced Pluripotent Stem Cells

    Wang, K., Guzman, A. K., Yan, Z., Zhang, S., Hu, M. Y., Hamaneh, M. B., Yu, Y. K., Tolu, S., Zhang, J., Kanavy, H. E., Ye, K., Bartholdy, B. & Bouhassira, E. E., Mar 5 2019, In: Cell Reports. 26, 10, p. 2580-2592.e7

    Research output: Contribution to journalArticlepeer-review

    Open Access
    4 Scopus citations
  • 2018

    Adjustment for covariates using summary statistics of genome-wide association studies

    Wang, T., Xue, X., Xie, X., Ye, K., Zhu, X. & Elston, R. C., Dec 2018, In: Genetic Epidemiology. 42, 8, p. 812-825 14 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Computational Analysis of Neonatal Mouse Ultrasonic Vocalization

    Ó Broin, P., Beckert, M. V., Takahashi, T., Izumi, T., Ye, K., Kang, G., Pouso, P., Topolski, M., Pena, J. L. & Hiroi, N., Jun 1 2018, In: Current protocols in mouse biology. 8, 2, p. e46

    Research output: Contribution to journalArticlepeer-review

    3 Scopus citations
  • Copy number elevation of 22q11.2 genes arrests the developmental maturation of working memory capacity and adult hippocampal neurogenesis

    Boku, S., Izumi, T., Abe, S., Takahashi, T., Nishi, A., Nomaru, H., Naka, Y., Kang, G., Nagashima, M., Hishimoto, A., Enomoto, S., Duran-Torres, G., Tanigaki, K., Zhang, J., Ye, K., Kato, S., Männistö, P. T., Kobayashi, K. & Hiroi, N., Apr 1 2018, In: Molecular Psychiatry. 23, 4, p. 985-992 8 p.

    Research output: Contribution to journalArticlepeer-review

    10 Scopus citations
  • Detecting, quantifying, and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq

    Kong, Y., Berko, E. R., Marcketta, A., Maqbool, S. B., Simões-Pires, C. A., Kronn, D. F., Ye, K. Q., Suzuki, M., Auton, A. & Greally, J. M., Jul 2018, In: Genome research. 28, 7, p. 1039-1052 14 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Evaluation of Hair Density in Different Ethnicities in a Healthy American Population Using Quantitative Trichoscopic Analysis

    Birnbaum, M. R., McLellan, B. N., Shapiro, J., Ye, K. & Reid, S. D., Oct 1 2018, In: Skin Appendage Disorders. 4, 4, p. 304-307 4 p.

    Research output: Contribution to journalArticlepeer-review

    6 Scopus citations
  • Improved Dose-Response Relationship of (+)-Discodermolide-Taxol Hybrid Congeners

    Nadaradjane, C., Yang, C. P. H., Rodriguez-Gabin, A., Ye, K., Sugasawa, K., Atasoylu, O., Smith, A. B., Horwitz, S. B. & McDaid, H. M., Mar 23 2018, In: Journal of Natural Products. 81, 3, p. 607-615 9 p.

    Research output: Contribution to journalArticlepeer-review

    3 Scopus citations
  • MicroRNA expression in benign breast tissue and risk of subsequent invasive breast cancer

    Rohan, T., Ye, K., Wang, Y., Glass, A. G., Ginsberg, M. & Loudig, O., Feb 2018, In: PloS one. 13, 2, e0191814.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • 1 Scopus citations
  • Ventricular Arterial Coupling: A Novel Echocardiographic Risk Factor for Disease Progression in Pediatric Dilated Cardiomyopathy

    Capone, C. A., Lamour, J. M., Lorenzo, J., Tria, B., Ye, Q. K., Hsu, D. T. & Mahgerefteh, J., Jan 1 2018, (Accepted/In press) In: Pediatric Cardiology.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • 2017

    Association between lifestyle, menstrual/reproductive history, and histological factors and risk of breast cancer in women biopsied for benign breast disease

    Arthur, R., Wang, Y., Ye, K., Glass, A. G., Ginsberg, M., Loudig, O. & Rohan, T., Oct 1 2017, In: Breast Cancer Research and Treatment. 165, 3, p. 623-631 9 p.

    Research output: Contribution to journalArticlepeer-review

    12 Scopus citations
  • Evaluation and adaptation of a laboratory-based cDNA library preparation protocol for retrospective sequencing of archived microRNAs from up to 35-year-old clinical FFPE specimens

    Loudig, O., Wang, T., Ye, K., Lin, J., Wang, Y., Ramnauth, A., Liu, C., Stark, A., Chitale, D., Greenlee, R., Multerer, D., Honda, S., Daida, Y., Feigelson, H. S., Glass, A., Couch, F. J., Rohan, T. & Ben-Dov, I. Z., Mar 14 2017, In: International Journal of Molecular Sciences. 18, 3, 627.

    Research output: Contribution to journalArticlepeer-review

    9 Scopus citations
  • Measuring shared variants in cohorts of discordant siblings with applications to autism

    Ye, K., Iossifov, I., Levy, D., Yamrom, B., Buja, A., Krieger, A. M. & Wigler, M., Jul 3 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 27, p. 7073-7076 4 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • 2016

    Molecular Histochemistry Identifies Peptidomic Organization and Reorganization Along Striatal Projection Units

    Hishimoto, A., Nomaru, H., Ye, K., Nishi, A., Lim, J., Aguilan, J. T., Nieves, E., Kang, G., Angeletti, R. H. & Hiroi, N., Mar 1 2016, In: Biological Psychiatry. 79, 5, p. 415-420 6 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • Structure and function of neonatal social communication in a genetic mouse model of autism

    Takahashi, T., Okabe, S., Broin, P., Nishi, A., Ye, K., Beckert, M. V., Izumi, T., Machida, A., Kang, G., Abe, S., Pena, J. L., Golden, A., Kikusui, T. & Hiroi, N., Sep 1 2016, In: Molecular Psychiatry. 21, 9, p. 1208-1214 7 p.

    Research output: Contribution to journalArticlepeer-review

    41 Scopus citations
  • The Cervicovaginal Microbiota and Its Associations with Human Papillomavirus Detection in HIV-Infected and HIV-Uninfected Women

    Reimers, L. L., Mehta, S. D., Massad, L. S., Burk, R. D., Xie, X., Ravel, J., Cohen, M. H., Palefsky, J. M., Weber, K. M., Xue, X., Anastos, K., Minkoff, H., Atrio, J., D'Souza, G., Ye, Q., Colie, C., Zolnik, C. P., Spear, G. T. & Strickler, H. D., Nov 1 2016, In: Journal of Infectious Diseases. 214, 9, p. 1361-1369 9 p.

    Research output: Contribution to journalArticlepeer-review

    23 Scopus citations
  • 2015

    Bayesian detection of embryonic gene expression onset in C. elegans

    Hu, J., Zhao, Z., Yalamanchili, H. K., Wang, J., Ye, K. & Fan, X., Jun 1 2015, In: Annals of Applied Statistics. 9, 2, p. 950-968 19 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • Low load for disruptive mutations in autism genes and their biased transmission

    Iossifov, I., Levy, D., Allen, J., Ye, K., Ronemus, M., Lee, Y. H., Yamrom, B. & Wigler, M., Oct 13 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 41, p. E5600-E5607

    Research output: Contribution to journalArticlepeer-review

    73 Scopus citations
  • 2014

    Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

    Delaneau, O., Marchini, J., McVeanh, G. A., Donnelly, P., Lunter, G., Marchini, J. L., Myers, S., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Kerasidou, A., Churchhouse, C., Altshuler, D. M., Gabriel, S. B., Lander, E. S., Gupta, N., Daly, M. J., DePristo, M. A. & 363 others, Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Li, H., Reich, D., Durbin, R. M., Hurles, M. E., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Scally, A., Walter, K., Xue, Y., Zhang, Y., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Chris, T. S., Abecasis, G. R., Kang, H. M., Anderson, P., Blackwell, T., Busonero, F., Fuchsberger, C., Jun, G., Maschio, A., Porcu, E., Sidore, C., Tan, A., Trost, M. K., Bentley, D. R., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., Murray, L., Shaw, R., Chakravarti, A., Clark, A. G., Keinan, A., Rodriguez-Flores, J. L., De LaVega, F. M., Degenhardt, J., Eichler, E. E., Flicek, P., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Gibbs, R. A., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Fowler, G., Hale, W., Kalra, D., Green, E. D., Knoppers, B. M., Korbel, J. O., Rausch, T., Sttz, A. M., Lee, C., Griffin, L., Hsieh, C. H., Mills, R. E., Von Grotthuss, M., Zhang, C., Shi, X., Lehrach, H., Sudbrak, R., Amstislavskiy, V. S., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Herwig, S. R., Mardis, E. R., Wilson, R. K., Fulton, L., Fulton, R., Weinstock, G. M., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Marth, G. T., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Ward, A. N., Wu, J., Zhang, M., Nickerson, D. A., Alkan, C., Hormozdiari, F., Ko, A., Sudmant, P. H., Schmidt, J. P., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Sherry, S. T., Xiao, C., Church, D., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Wang, J., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Liu, X., Lu, Y., Ma, X., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Lachlan, H., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zheng, H., Zhu, H., Cai, H., Cao, H., Su, Y., Tian, Z., Yang, H., Yang, L., Zhu, J., Cai, Z., Wang, J., Albrecht, M. W., Borodina, T. A., Auton, A., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Kim, K. C., Gottipati, S., Jones, D., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Kahn, S., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Shriver, M. D., Bustamante, C. D., Gravel, S., Kenny, E. E., Kidd, J. M., Lacroute, P., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Henn, B., Sandoval, K., Byrnes, J. K., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Homer, N., Squire, K., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Angius, A., Cucca, F., Sanna, S., Bigham, A., Jones, C., Reinier, F., Li, Y., Lyons, R., Schlessinger, D., Awadalla, P., Hodgkinson, A., Oleksyk, T. K., Martinez-Cruzado, J. C., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Hajirasouliha, I., Chen, K., Albers, C. A., Gerstein, M. B., Abyzov, A., Chen, J., Fu, Y., Habegger, L., Harmanci, A. O., Mu, X. J., Sisu, C., Balasubramanian, S., Jin, M., Khurana, E., Clarke, D., Michaelson, J. J., OSullivan, C., Barnes, K. C., Gharani, N., Toji, L. H., Gerry, N., Kaye, J. S., Kent, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Tishkoff, S., Via, M., Bodmer, W., Bedoya, G., Yang, G., You, C. J., Garcia-Montero, A., Orfao, A., Dutil, J., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Guyer, M. S., Peterson, J. L., Duncanson, A., Dunn, M. & Peltonen, L., Jun 13 2014, In: Nature communications. 5, 3934.

    Research output: Contribution to journalArticlepeer-review

    193 Scopus citations
  • The contribution of de novo coding mutations to autism spectrum disorder

    Iossifov, I., O'Roak, B. J., Sanders, S. J., Ronemus, M., Krumm, N., Levy, D., Stessman, H. A., Witherspoon, K. T., Vives, L., Patterson, K. E., Smith, J. D., Paeper, B., Nickerson, D. A., Dea, J., Dong, S., Gonzalez, L. E., Mandell, J. D., Mane, S. M., Murtha, M. T., Sullivan, C. A. & 27 others, Walker, M. F., Waqar, Z., Wei, L., Willsey, A. J., Yamrom, B., Lee, Y. H., Grabowska, E., Dalkic, E., Wang, Z., Marks, S., Andrews, P., Leotta, A., Kendall, J., Hakker, I., Rosenbaum, J., Ma, B., Rodgers, L., Troge, J., Narzisi, G., Yoon, S., Schatz, M. C., Ye, K., McCombie, W. R., Shendure, J., Eichler, E. E., State, M. W. & Wigler, M., Nov 13 2014, In: Nature. 515, 7526, p. 216-221 6 p.

    Research output: Contribution to journalArticlepeer-review

    1131 Scopus citations
  • 2013

    Common genetic variants regulating ADD3 gene expression alter biliary atresia risk

    Cheng, G., Tang, C. S. M., Wong, E. H. M., Cheng, W. W. C., So, M. T., Miao, X., Zhang, R., Cui, L., Liu, X., Ngan, E. S. W., Lui, V. C. H., Chung, P. H. Y., Chan, I. H. Y., Liu, J., Zhong, W., Xia, H., Yu, J., Qiu, X., Wu, X. Z., Wang, B. & 13 others, Dong, X., Tou, J., Huang, L., Yi, B., Ren, H., Chan, E. K. W., Ye, K., O'Reilly, P. F., Wong, K. K. Y., Sham, P. C., Cherny, S. S., Tam, P. K. H. & Garcia-Barceló, M. M., Dec 2013, In: Journal of Hepatology. 59, 6, p. 1285-1291 7 p.

    Research output: Contribution to journalArticlepeer-review

    44 Scopus citations
  • 2012

    An integrated map of genetic variation from 1,092 human genomes

    Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., Marth, G. T. & 371 others, McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. 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Z., Yang, G., Jia You, C., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S., Peterson, J. L. & Lacroute, P., Nov 1 2012, In: Nature. 491, 7422, p. 56-65 10 p.

    Research output: Contribution to journalArticlepeer-review

    5074 Scopus citations
  • De Novo Gene Disruptions in Children on the Autistic Spectrum

    Iossifov, I., Ronemus, M., Levy, D., Wang, Z., Hakker, I., Rosenbaum, J., Yamrom, B., Lee, Y. H., Narzisi, G., Leotta, A., Kendall, J., Grabowska, E., Ma, B., Marks, S., Rodgers, L., Stepansky, A., Troge, J., Andrews, P., Bekritsky, M., Pradhan, K. & 15 others, Ghiban, E., Kramer, M., Parla, J., Demeter, R., Fulton, L. L., Fulton, R. S., Magrini, V. J., Ye, K., Darnell, J. C., Darnell, R. B., Mardis, E. R., Wilson, R. K., Schatz, M. C., McCombie, R. W. & Wigler, M., Apr 26 2012, In: Neuron. 74, 2, p. 285-299 15 p.

    Research output: Contribution to journalArticlepeer-review

    925 Scopus citations
  • Design and statistical analysis of pooled next generation sequencing for rare variants

    Wang, T., Lin, C. Y., Zhang, Y., Wen, R. & Ye, K., 2012, In: Journal of Probability and Statistics. 524724.

    Research output: Contribution to journalArticlepeer-review

    3 Scopus citations
  • 19 Scopus citations
  • Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens

    Kotorashvili, A., Ramnauth, A., Liu, C., Lin, J., Ye, K., Kim, R., Hazan, R., Rohan, T., Fineberg, S. & Loudig, O., Apr 13 2012, In: PloS one. 7, 4, e34683.

    Research output: Contribution to journalArticlepeer-review

    45 Scopus citations
  • Gene Size Matters

    Mirina, A., Atzmon, G., Ye, K. & Bergman, A., Nov 9 2012, In: PloS one. 7, 11, e49093.

    Research output: Contribution to journalArticlepeer-review

    15 Scopus citations
  • Genotype copy number variations using Gaussian mixture models: Theory and algorithms

    Lin, C. Y., Lo, Y. & Ye, K. Q., Sep 2012, In: Statistical Applications in Genetics and Molecular Biology. 11, 5, 5.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Reducing system noise in copy number data using principal components of self-self hybridizations

    Lee, Y. H., Ronemus, M., Kendall, J., Lakshmi, B., Leotta, A., Levy, D., Esposito, D., Grubor, V., Ye, K., Wigler, M. & Yamroma, B., Jan 17 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 3, p. E103-E110

    Research output: Contribution to journalArticlepeer-review

    5 Scopus citations
  • 2011

    Detecting multiple causal rare variants in exome sequence data

    Ye, K. Q. & Engelman, C. D., 2011, In: Genetic Epidemiology. 35, SUPPL. 1, p. S18-S21

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples

    Wang, T., Pradhan, K., Ye, K., Wong, L. J. & Rohan, T. E., 2011, In: Frontiers in Genetics. 2, AUG, Article 51.

    Research output: Contribution to journalArticlepeer-review

    10 Scopus citations
  • Mapping copy number variation by population-scale genome sequencing

    Mills, R. E., Walter, K., Stewart, C., Handsaker, R. E., Chen, K., Alkan, C., Abyzov, A., Yoon, S. C., Ye, K., Cheetham, R. K., Chinwalla, A., Conrad, D. F., Fu, Y., Grubert, F., Hajirasouliha, I., Hormozdiari, F., Iakoucheva, L. M., Iqbal, Z., Kang, S., Kidd, J. M. & 353 others, Konkel, M. K., Korn, J., Khurana, E., Kural, D., Lam, H. Y. K., Leng, J., Li, R., Li, Y., Lin, C. Y., Luo, R., Mu, X. J., Nemesh, J., Peckham, H. E., Rausch, T., Scally, A., Shi, X., Stromberg, M. P., Sütz, A. M., Urban, A. E., Walker, J. A., Wu, J., Zhang, Y., Zhang, Z. D., Batzer, M. A., Ding, L., Marth, G. T., McVean, G., Sebat, J., Snyder, M., Wang, J., Ye, K., Eichler, E. E., Gerstein, M. B., Hurles, M. E., Lee, C., McCarroll, S. A., Korbel, J. O., Collins, F. S., Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L., Schafer, A. J., Sherry, S. T., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Li, J., Jian, M., Li, G., Liang, H., Tian, G., Wang, B., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., McKernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Tai, S., Wu, H., Zheng, X., Zhou, Y., Garrison, E. P., Huang, W., Indap, A., Lee, W. P., Leong, W. F., Quinlan, A. R., Ward, A. N., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Makarov, V., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Zheng-Bradley, X., Stütz, A. M., Bauer, M., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Hyland, F. C., Manning, J. M., McLaughlin, S. F., Sakarya, O., Sun, Y. A., Tsung, E. F., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Auton, A., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Aksay, G., Sahinalp, S. C., Sudmant, P. H., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Jin, H., Jostins, L., Keane, T. M., Le, S. Q., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Tyler-Smith, C., Balasubramanian, S., Bjornson, R., Du, J., Habegger, L., Haraksingh, R., Jee, J., Lam, H. Y., Jeng, J., Zhang, Z., Bank, E., Yoon, S., Kidd, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Khouri, H. M., Scott, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Feb 3 2011, In: Nature. 470, 7332, p. 59-65 7 p.

    Research output: Contribution to journalArticlepeer-review

    746 Scopus citations
  • Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders

    Levy, D., Ronemus, M., Yamrom, B., Lee, Y. H., Leotta, A., Kendall, J., Marks, S., Lakshmi, B., Pai, D., Ye, K., Buja, A., Krieger, A., Yoon, S., Troge, J., Rodgers, L., Iossifov, I. & Wigler, M., Jun 9 2011, In: Neuron. 70, 5, p. 886-897 12 p.

    Research output: Contribution to journalArticlepeer-review

    460 Scopus citations
  • 2010

    A map of human genome variation from population-scale sequencing

    Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L. & 348 others, Schafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Wang, S. J., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, J., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Bentley, I. D. R., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., Mc Kernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Handsaker, R. E., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Sebat, J., Makarov, V., Ye, K., Yoon, S. C., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Korbel, J. O., Stütz, A. M., Humphray, I. S., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Ye, K., Fu, Y., Hyland, F. C. L., Manning, J. M., Stephen, F. M., Peckham, H. E., Sakarya, O., Sun, Y. A., Tsung, E. F., Mark, A. B., Konkel, M. K., Walker, J. A., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H. M., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Gil, A. M., Auton, A., Iqbal, Z., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Li, Y., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Snyder, M., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Eichler, E. E., Aksay, G., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Kidd, J. M., CenkSahinalp, S., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Conrad, D. F., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Matt, E. H., Jin, H., Jostins, L., Keane, T. M., Quang Le, S., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Chris Tyler-Smith, T-S., Walter, K., Zhang, Y., Gerstein, M. B., Snyder, M., Abyzov, A., Balasubramanian, S., Bjornson, R., Grubert, F., Habegger, L., Haraksingh, R., Khurana, E., Lam, H. Y. K., Leng, J., Mu, X. J., Urban, A. E., Zhang, Z., McCarroll, S. A., Zheng-Bradley, X., Batzer, M. A., Hurles, M. E., Du, J., Jee, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Coffey, A., Scott, C., Tyler-Smith, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. 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    Research output: Contribution to journalArticlepeer-review

    5382 Scopus citations