• Source: Scopus
  • Calculated based on no. of publications stored in Pure and citations from Scopus
1996 …2022

Research activity per year

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Search results

  • A Bayesian approach for applying Haseman-Elston methods

    Yoon, S., Suh, Y. J., Mendell, N. R. & Ye, K. Q., Dec 30 2005, In: BMC genetics. 6, SUPPL.1, S39.

    Research output: Contribution to journalArticlepeer-review

    3 Scopus citations
  • Adaptations of trabecular bone to low magnitude vibrations result in more uniform stress and strain under load

    Judex, S., Boyd, S., Quin, Y. X., Turner, S., Ye, K., Müller, R. & Rubin, C., 2003, In: Annals of Biomedical Engineering. 31, 1, p. 12-20 9 p.

    Research output: Contribution to journalArticlepeer-review

    90 Scopus citations
  • Adjustment for covariates using summary statistics of genome-wide association studies

    Wang, T., Xue, X., Xie, X., Ye, K., Zhu, X. & Elston, R. C., Dec 2018, In: Genetic Epidemiology. 42, 8, p. 812-825 14 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • A gene-model-free method for linkage analysis of a disease-related-trait based on analysis of proband/sibling pairs

    Sung, H., Finch, S. J., Ye, K. Q. & Mendell, N. R., Dec 30 2005, In: BMC genetics. 6, SUPPL.1, S47.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • A global reference for human genetic variation

    Auton, A., Abecasis, G. R., Altshuler, D. M., Durbin, R. M., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R. & 457 others, Marth, G. T., McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Boerwinkle, E., Doddapaneni, H., Han, Y., Korchina, V., Kovar, C., Lee, S., Muzny, D., Reid, J. G., Zhu, Y., Chang, Y., Feng, Q., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Lan, T., Li, G., Li, J., Li, Y., Liu, S., Liu, X., Lu, Y., Ma, X., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Xu, X., Yin, Y., Zhang, D., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Gupta, N., Gharani, N., Toji, L. H., Gerry, N. P., Resch, A. M., Barker, J., Clarke, L., Gil, L., Hunt, S. E., Kelman, G., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Roa, A., Smirnov, D., Smith, R. E., Streeter, I., Thormann, A., Toneva, I., Vaughan, B., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Church, D., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Campbell, C. L., Kong, Y., Marcketta, A., Yu, F., Antunes, L., Bainbridge, M., Sabo, A., Huang, Z., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Alkan, C., Dal, E., Kahveci, F., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Stromberg, M., Ward, A. N., Wu, J., Zhang, M., Daly, M. J., DePristo, M. A., Handsaker, R. E., Banks, E., Bhatia, G., Del Angel, G., Genovese, G., Li, H., Kashin, S., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Yoon, S. C., Lihm, J., Makarov, V., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Rausch, T., Fritz, M. H., Stütz, A. M., Beal, K., Datta, A., Herrero, J., Ritchie, G. R. S., Zerbino, D., Sabeti, P. C., Shlyakhter, I., Schaffner, S. F., Vitti, J., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Cheetham, R. K., Cox, A., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Kenny, E. E., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Ding, L., Koboldt, D. C., Larson, D., Ye, K., Gravel, S., Swaroop, A., Chew, E., Lappalainen, T., Erlich, Y., Gymrek, M., Willems, T. F., Simpson, J. T., Shriver, M. D., Rosenfeld, J. A., Bustamante, C. D., Montgomery, S. B., De La Vega, F. M., Byrnes, J. K., Carroll, A. W., DeGorter, M. K., Lacroute, P., Maples, B. K., Martin, A. R., Moreno-Estrada, A., Shringarpure, S. S., Zakharia, F., Halperin, E., Baran, Y., Cerveira, E., Hwang, J., Malhotra, A., Plewczynski, D., Radew, K., Romanovitch, M., Zhang, C., Hyland, F. C. L., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Antaki, D., Gujral, M., Noor, A., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Devine, S. E., Kang, H. M., Kidd, J. M., Blackwell, T., Caron, S., Chen, W., Emery, S., Fritsche, L., Fuchsberger, C., Jun, G., Li, B., Lyons, R., Scheller, C., Sidore, C., Song, S., Sliwerska, E., Taliun, D., Tan, A., Welch, R., Wing, M. K., Zhan, X., Awadalla, P., Hodgkinson, A., Li, Y., Shi, X., Quitadamo, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Kretzschmar, W., Iqbal, Z., Mathieson, I., Menelaou, A., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Browning, S. R., Hormozdiari, F., Sudmant, P. H., Khurana, E., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Colonna, V., Jostins, L., Walter, K., Xue, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Harmanci, A. O., Jin, M., Lee, D., Liu, J., Mu, X. J., Zhang, J., Zhang, Y., Hartl, C., Shakir, K., Degenhardt, J., Meiers, S., Raeder, B., Casale, F. P., Stegle, O., Lameijer, E. W., Hall, I., Bafna, V., Michaelson, J., Gardner, E. J., Mills, R. E., Dayama, G., Chen, K., Fan, X., Chong, Z., Chen, T., Chaisson, M. J., Huddleston, J., Malig, M., Nelson, B. J., Parrish, N. F., Blackburne, B., Lindsay, S. J., Ning, Z., Zhang, Y., Lam, H., Sisu, C., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Yu, J., Li, W., Habegger, L., Yu, H., Cunningham, F., Dunham, I., Lage, K., Jespersen, J. B., Horn, H., Kim, D., Desalle, R., Narechania, A., Sayres, M. A. W., Mendez, F. L., Poznik, G. D., Underhill, P. A., Mittelman, D., Banerjee, R., Cerezo, M., Fitzgerald, T. W., Louzada, S., Massaia, A., Yang, F., Kalra, D., Hale, W., Dan, X., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Cai, Z., Gao, Y., Chu, J., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Mathias, R. A., Hennis, A., Watson, H., McKenzie, C., Qadri, F., LaRocque, R., Deng, X., Asogun, D., Folarin, O., Happi, C., Omoniwa, O., Stremlau, M., Tariyal, R., Jallow, M., Joof, F. S., Corrah, T., Rockett, K., Kwiatkowski, D., Kooner, J., Hien, T. T., Dunstan, S. J., ThuyHang, N., Fonnie, R., Garry, R., Kanneh, L., Moses, L., Schieffelin, J., Grant, D. S., Gallo, C., Poletti, G., Saleheen, D., Rasheed, A., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Vaydylevich, Y., Duncanson, A., Dunn, M. & Schloss, J. A., Sep 30 2015, In: Nature. 526, 7571, p. 68-74 7 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    7255 Scopus citations
  • Algorithmic construction of optimal symmetric Latin hypercube designs

    Ye, K. Q., Li, W. & Sudjianto, A., Sep 1 2000, In: Journal of Statistical Planning and Inference. 90, 1, p. 145-159 15 p.

    Research output: Contribution to journalArticlepeer-review

    380 Scopus citations
  • A map of human genome variation from population-scale sequencing

    Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L. & 348 others, Schafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Wang, S. J., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, J., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Bentley, I. D. R., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., Mc Kernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Handsaker, R. E., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Sebat, J., Makarov, V., Ye, K., Yoon, S. C., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Korbel, J. O., Stütz, A. M., Humphray, I. S., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Ye, K., Fu, Y., Hyland, F. C. L., Manning, J. M., Stephen, F. M., Peckham, H. E., Sakarya, O., Sun, Y. A., Tsung, E. F., Mark, A. B., Konkel, M. K., Walker, J. A., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H. M., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Gil, A. M., Auton, A., Iqbal, Z., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Li, Y., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Snyder, M., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Eichler, E. E., Aksay, G., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Kidd, J. M., CenkSahinalp, S., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Conrad, D. F., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Matt, E. H., Jin, H., Jostins, L., Keane, T. M., Quang Le, S., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Chris Tyler-Smith, T-S., Walter, K., Zhang, Y., Gerstein, M. B., Snyder, M., Abyzov, A., Balasubramanian, S., Bjornson, R., Grubert, F., Habegger, L., Haraksingh, R., Khurana, E., Lam, H. Y. K., Leng, J., Mu, X. J., Urban, A. E., Zhang, Z., McCarroll, S. A., Zheng-Bradley, X., Batzer, M. A., Hurles, M. E., Du, J., Jee, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Coffey, A., Scott, C., Tyler-Smith, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Oct 28 2010, In: Nature. 467, 7319, p. 1061-1073 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    5750 Scopus citations
  • A meta-analysis of genome-wide association studies identifies multiple longevity genes

    Deelen, J., Evans, D. S., Arking, D. E., Tesi, N., Nygaard, M., Liu, X., Wojczynski, M. K., Biggs, M. L., van der Spek, A., Atzmon, G., Ware, E. B., Sarnowski, C., Smith, A. V., Seppälä, I., Cordell, H. J., Dose, J., Amin, N., Arnold, A. M., Ayers, K. L., Barzilai, N. & 64 others, Becker, E. J., Beekman, M., Blanché, H., Christensen, K., Christiansen, L., Collerton, J. C., Cubaynes, S., Cummings, S. R., Davies, K., Debrabant, B., Deleuze, J. F., Duncan, R., Faul, J. D., Franceschi, C., Galan, P., Gudnason, V., Harris, T. B., Huisman, M., Hurme, M. A., Jagger, C., Jansen, I., Jylhä, M., Kähönen, M., Karasik, D., Kardia, S. L. R., Kingston, A., Kirkwood, T. B. L., Launer, L. J., Lehtimäki, T., Lieb, W., Lyytikäinen, L. P., Martin-Ruiz, C., Min, J., Nebel, A., Newman, A. B., Nie, C., Nohr, E. A., Orwoll, E. S., Perls, T. T., Province, M. A., Psaty, B. M., Raitakari, O. T., Reinders, M. J. T., Robine, J. M., Rotter, J. I., Sebastiani, P., Smith, J., Sørensen, T. I. A., Taylor, K. D., Uitterlinden, A. G., van der Flier, W., van der Lee, S. J., van Duijn, C. M., van Heemst, D., Vaupel, J. W., Weir, D., Ye, K., Zeng, Y., Zheng, W., Holstege, H., Kiel, D. P., Lunetta, K. L., Slagboom, P. E. & Murabito, J. M., Dec 1 2019, In: Nature communications. 10, 1, 3669.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    90 Scopus citations
  • A method for evaluating the results of Bayesian model selection: Application to linkage analyses of attributes determined by two or more genes

    Suh, Y. J., Ye, K. Q. & Mendell, N. R., 2003, In: Human Heredity. 55, 2-3, p. 147-152 6 p.

    Research output: Contribution to journalArticlepeer-review

    5 Scopus citations
  • A minimum variance kernel estimator and a discrete frequency polygon estimator for ordinal contingency tables

    Dong, J. & Ye, Q., 1996, In: Communications in Statistics - Theory and Methods. 25, 12, p. 3217-3245 29 p.

    Research output: Contribution to journalArticlepeer-review

    2 Scopus citations
  • Analysis of functional responses from robust design studies

    Nair, V. N., Taam, W. & Ye, K. Q., Oct 2002, In: Journal of Quality Technology. 34, 4, p. 355-371 17 p.

    Research output: Contribution to journalArticlepeer-review

    49 Scopus citations
  • Analysis of polymorphisms in AT-rich domains of neuregulin 1 gene in schizophrenia

    Lachman, H. M., Pedrosa, E., Nolan, K. A., Glass, M., Ye, K. & Saito, T., Jan 5 2006, In: American Journal of Medical Genetics - Neuropsychiatric Genetics. 141 B, 1, p. 102-109 8 p.

    Research output: Contribution to journalArticlepeer-review

    34 Scopus citations
  • An integrated map of genetic variation from 1,092 human genomes

    Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., Marth, G. T. & 371 others, McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Auton, A., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Fung Leong, W., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., Von Grotthuss, M., Zhang, C., Daly, M. J., Depristo, M. A., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Cheol Kim, K., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Keira Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., James Kent, W., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. 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    Research output: Contribution to journalArticlepeer-review

    Open Access
    5473 Scopus citations
  • An integrative genomic and epigenomic approach for the study of transcriptional regulation

    Figueroa, M. E., Reimers, M., Thompson, R. F., Ye, K., Li, Y., Selzer, R. R., Fridriksson, J., Paietta, E., Wiernik, P., Green, R. D., Greally, J. M. & Melnick, A., Mar 26 2008, In: PloS one. 3, 3, e1882.

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    76 Scopus citations
  • A note on regular fractional factorial designs

    Ye, K. Q., Oct 1 2004, In: Statistica Sinica. 14, 4, p. 1069-1074 6 p.

    Research output: Contribution to journalArticlepeer-review

    16 Scopus citations
  • A partial least-square approach for modeling gene-gene and gene-environment interactions when multiple markers are genotyped

    Wang, T., Ho, G., Ye, K., Strickler, H. & Elston, R. C., 2009, In: Genetic Epidemiology. 33, 1, p. 6-15 10 p.

    Research output: Contribution to journalArticlepeer-review

    37 Scopus citations
  • Association between lifestyle, menstrual/reproductive history, and histological factors and risk of breast cancer in women biopsied for benign breast disease

    Arthur, R., Wang, Y., Ye, K., Glass, A. G., Ginsberg, M., Loudig, O. & Rohan, T., Oct 1 2017, In: Breast Cancer Research and Treatment. 165, 3, p. 623-631 9 p.

    Research output: Contribution to journalArticlepeer-review

    18 Scopus citations
  • A step-down lenth method for analyzing unreplicated factorial designs

    Ye, K. Q., Hamada, M. & Wu, C. F. J., Dec 1 2001, In: Journal of Quality Technology. 33, 2, p. 140-152 13 p.

    Research output: Contribution to journalArticlepeer-review

    41 Scopus citations
  • A unified genetic theory for sporadic and inherited autism

    Zhao, X., Leotta, A., Kustanovich, V., Lajonchere, C., Geschwind, D. H., Law, K., Law, P., Qiu, S., Lord, C., Sebat, J., Ye, K. & Wigler, M., Jul 31 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 31, p. 12831-12836 6 p.

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    233 Scopus citations
  • Bayesian detection of embryonic gene expression onset in C. elegans

    Hu, J., Zhao, Z., Yalamanchili, H. K., Wang, J., Ye, K. & Fan, X., Jun 1 2015, In: Annals of Applied Statistics. 9, 2, p. 950-968 19 p.

    Research output: Contribution to journalArticlepeer-review

    6 Scopus citations
  • Behavioral and Genetic Factors Associated with Successful Long-Term Cessation in Persons with HIV Who Smoke Cigarettes

    Shuter, J., Hosgood, H. D., Kim, R. S., Ye, K., Montagna, C., Shan, J. & Weinberger, A. H., 2021, In: Journal of Smoking Cessation. 2021, 1894160.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Blocked nonregular two-level factorial designs

    Cheng, S. W., Li, W. & Ye, K. Q., Aug 2004, Technometrics, 46, 3, p. 269-279 11 p.

    Research output: Contribution to specialist publicationArticle

    36 Scopus citations
  • Buffering mechanisms in aging: A systems approach toward uncovering the genetic component of aging

    Bergman, A., Atzmon, G., Ye, K., MacCarthy, T. & Barzilai, N., Aug 2007, In: PLoS Computational Biology. 3, 8, p. 1648-1656 9 p.

    Research output: Contribution to journalArticlepeer-review

    98 Scopus citations
  • Clearing the congestion chest radiography and BNP to rule-out congestive heart failure

    Berman, J., Lee, L., Monga, R., Ye, K., Sprayregen, S. & Haramati, L. B., 2021, (Accepted/In press) In: Journal of Thoracic Imaging.

    Research output: Contribution to journalArticlepeer-review

  • Common genetic variants regulating ADD3 gene expression alter biliary atresia risk

    Cheng, G., Tang, C. S. M., Wong, E. H. M., Cheng, W. W. C., So, M. T., Miao, X., Zhang, R., Cui, L., Liu, X., Ngan, E. S. W., Lui, V. C. H., Chung, P. H. Y., Chan, I. H. Y., Liu, J., Zhong, W., Xia, H., Yu, J., Qiu, X., Wu, X. Z., Wang, B. & 13 others, Dong, X., Tou, J., Huang, L., Yi, B., Ren, H., Chan, E. K. W., Ye, K., O'Reilly, P. F., Wong, K. K. Y., Sham, P. C., Cherny, S. S., Tam, P. K. H. & Garcia-Barceló, M. M., Dec 2013, In: Journal of Hepatology. 59, 6, p. 1285-1291 7 p.

    Research output: Contribution to journalArticlepeer-review

    54 Scopus citations
  • Comparative isoschizomer profiling of cytosine methylation: The HELP assay

    Khulan, B., Thompson, R. F., Ye, K., Fazzari, M. J., Suzuki, M., Stasiek, E., Figueroa, M. E., Glass, J. L., Chen, Q., Montagna, C., Hatchwell, E., Selzer, R. R., Richmond, T. A., Green, R. D., Melnick, A. & Greally, J. M., 2006, In: Genome research. 16, 8, p. 1046-1055 10 p.

    Research output: Contribution to journalArticlepeer-review

    332 Scopus citations
  • Computational Analysis of Neonatal Mouse Ultrasonic Vocalization

    Ó Broin, P., Beckert, M. V., Takahashi, T., Izumi, T., Ye, K., Kang, G., Pouso, P., Topolski, M., Pena, J. L. & Hiroi, N., Jun 1 2018, In: Current protocols in mouse biology. 8, 2, p. e46

    Research output: Contribution to journalArticlepeer-review

    5 Scopus citations
  • Computational identification of variables in neonatal vocalizations predictive for postpubertal social behaviors in a mouse model of 16p11.2 deletion

    Nakamura, M., Ye, K., e Silva, M. B., Yamauchi, T., Hoeppner, D. J., Fayyazuddin, A., Kang, G., Yuda, E. A., Nagashima, M., Enomoto, S., Hiramoto, T., Sharp, R., Kaneko, I., Tajinda, K., Adachi, M., Mihara, T., Tokuno, S., Geyer, M. A., Broin, P., Matsumoto, M. & 1 others, Hiroi, N., Nov 2021, In: Molecular Psychiatry. 26, 11, p. 6578-6588 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Computing power and sample size for case-control association studies with copy number polymorphism: Application of mixture-based likelihood ratio test

    Kim, W., Gordon, D., Sebat, J., Ye, K. Q. & Finch, S. J., Oct 22 2008, In: PloS one. 3, 10, e3475.

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • Copy number elevation of 22q11.2 genes arrests the developmental maturation of working memory capacity and adult hippocampal neurogenesis

    Boku, S., Izumi, T., Abe, S., Takahashi, T., Nishi, A., Nomaru, H., Naka, Y., Kang, G., Nagashima, M., Hishimoto, A., Enomoto, S., Duran-Torres, G., Tanigaki, K., Zhang, J., Ye, K., Kato, S., Männistö, P. T., Kobayashi, K. & Hiroi, N., Apr 1 2018, In: Molecular Psychiatry. 23, 4, p. 985-992 8 p.

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • Critical values of the Lenth method for unreplicated factorial designs

    Ye, K. Q. & Hamada, M., Jan 1 2000, In: Journal of Quality Technology. 32, 1, p. 57-66 10 p.

    Research output: Contribution to journalArticlepeer-review

    51 Scopus citations
  • Data Mining and Computationally Intensive Methods: Summary of Group 7 Contributions to Genetic Analysis Workshop 13

    Costello, T. J., Falk, C. T. & Ye, K. Q., 2003, In: Genetic Epidemiology. 25, SUPPL. 1, p. S57-S63

    Research output: Contribution to journalArticlepeer-review

    5 Scopus citations
  • De Novo Gene Disruptions in Children on the Autistic Spectrum

    Iossifov, I., Ronemus, M., Levy, D., Wang, Z., Hakker, I., Rosenbaum, J., Yamrom, B., Lee, Y. H., Narzisi, G., Leotta, A., Kendall, J., Grabowska, E., Ma, B., Marks, S., Rodgers, L., Stepansky, A., Troge, J., Andrews, P., Bekritsky, M., Pradhan, K. & 15 others, Ghiban, E., Kramer, M., Parla, J., Demeter, R., Fulton, L. L., Fulton, R. S., Magrini, V. J., Ye, K., Darnell, J. C., Darnell, R. B., Mardis, E. R., Wilson, R. K., Schatz, M. C., McCombie, R. W. & Wigler, M., Apr 26 2012, In: Neuron. 74, 2, p. 285-299 15 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
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  • Design and statistical analysis of pooled next generation sequencing for rare variants

    Wang, T., Lin, C. Y., Zhang, Y., Wen, R. & Ye, K., 2012, In: Journal of Probability and Statistics. 524724.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    4 Scopus citations
  • Detecting, quantifying, and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq

    Kong, Y., Berko, E. R., Marcketta, A., Maqbool, S. B., Simões-Pires, C. A., Kronn, D. F., Ye, K. Q., Suzuki, M., Auton, A. J. & Greally, J. M., Jul 2018, In: Genome research. 28, 7, p. 1039-1052 14 p.

    Research output: Contribution to journalArticlepeer-review

    3 Scopus citations
  • Detecting multiple causal rare variants in exome sequence data

    Ye, K. Q. & Engelman, C. D., 2011, In: Genetic Epidemiology. 35, SUPPL. 1, p. S18-S21

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • Diagnostic significance of the CT rim sign in cases of gangrenous cholecystitis

    Erlichman, D. B., Lipman, J. N., In, H., Ye, K., Lin, J. & Goldman, I., May 2021, In: Clinical Imaging. 73, p. 53-56 4 p.

    Research output: Contribution to journalArticlepeer-review

  • Diagnostic yield of head CT in pediatric emergency department patients with acute psychosis or hallucinations

    Cunqueiro, A., Durango, A., Fein, D. M., Ye, K. & Scheinfeld, M. H., Feb 7 2019, In: Pediatric radiology. 49, 2, p. 240-244 5 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • Diffusion Tensor Imaging of the Evolving Response to Mild Traumatic Brain Injury in Rats

    Hoogenboom, W. S., Rubin, T. G., Ye, K., Cui, M. H., Branch, K. C., Liu, J., Branch, C. A. & Lipton, M. L., Jul 1 2019, In: Journal of Experimental Neuroscience. 13

    Research output: Contribution to journalArticlepeer-review

    Open Access
    14 Scopus citations
  • 21 Scopus citations
  • Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens

    Kotorashvili, A., Ramnauth, A., Liu, C., Lin, J., Ye, K., Kim, R., Hazan, R., Rohan, T., Fineberg, S. & Loudig, O., Apr 13 2012, In: PloS one. 7, 4, e34683.

    Research output: Contribution to journalArticlepeer-review

    51 Scopus citations
  • Effects of Diet Choice on Stem Cell Function Necessitate Clarity in Selection and Reporting

    Li, W., Houston, M., Peregrina, K., Ye, K. & Augenlicht, L. H., Jul 2 2020, In: Cell Stem Cell. 27, 1, p. 11-12 2 p.

    Research output: Contribution to journalLetterpeer-review

    2 Scopus citations
  • Emerging Adaptive Strategies Under Temperature Fluctuations in a Laboratory Evolution Experiment of Escherichia Coli

    Lambros, M., Pechuan-Jorge, X., Biro, D., Ye, K. & Bergman, A., Oct 22 2021, In: Frontiers in Microbiology. 12, 724982.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Epidemiology, Risk Factors and Outcomes of Pneumomediastinum in Patients with Coronavirus Disease 2019: A Case-Control Study

    Reis, A. E., Emami, N., Chand, S., Ogundipe, F., Belkin, D. L., Ye, K., Keene, A. B. & Levsky, J. M., Jan 2022, In: Journal of Intensive Care Medicine. 37, 1, p. 12-20 9 p.

    Research output: Contribution to journalArticlepeer-review

  • Open Access
  • Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples

    Wang, T., Pradhan, K., Ye, K., Wong, L. J. & Rohan, T. E., 2011, In: Frontiers in Genetics. 2, AUG, Article 51.

    Research output: Contribution to journalArticlepeer-review

    10 Scopus citations
  • Evaluation and adaptation of a laboratory-based cDNA library preparation protocol for retrospective sequencing of archived microRNAs from up to 35-year-old clinical FFPE specimens

    Loudig, O., Wang, T., Ye, K., Lin, J., Wang, Y., Ramnauth, A., Liu, C., Stark, A., Chitale, D., Greenlee, R., Multerer, D., Honda, S., Daida, Y., Feigelson, H. S., Glass, A., Couch, F. J., Rohan, T. & Ben-Dov, I. Z., Mar 14 2017, In: International Journal of Molecular Sciences. 18, 3, 627.

    Research output: Contribution to journalArticlepeer-review

    11 Scopus citations
  • Evaluation of Hair Density in Different Ethnicities in a Healthy American Population Using Quantitative Trichoscopic Analysis

    Birnbaum, M. R., McLellan, B. N., Shapiro, J., Ye, K. & Reid, S. D., Oct 1 2018, In: Skin Appendage Disorders. 4, 4, p. 304-307 4 p.

    Research output: Contribution to journalArticlepeer-review

    9 Scopus citations
  • Extracellular Vesicle Capture by AnTibody of CHoice and Enzymatic Release (EV-CATCHER): A customizable purification assay designed for small-RNA biomarker identification and evaluation of circulating small-EVs

    Mitchell, M. I., Ben-Dov, I. Z., Liu, C., Ye, K., Chow, K., Kramer, Y., Gangadharan, A., Park, S., Fitzgerald, S., Ramnauth, A., Perlin, D. S., Donato, M., Bhoy, E., Manouchehri Doulabi, E., Poulos, M., Kamali-Moghaddam, M. & Loudig, O., Jun 2021, In: Journal of Extracellular Vesicles. 10, 8, e12110.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    8 Scopus citations