Research Output

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2019

Signal transduction, ageing and disease

Zhang, L., Yousefzadeh, M. J., Suh, Y., Niedernhofer, L. J. & Robbins, P. D., Jan 1 2019, Subcellular Biochemistry. Springer New York, p. 227-247 21 p. (Subcellular Biochemistry; vol. 91).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Scopus citations
2018

Genome wide mapping of methylated and hydroxyl-methylated cytosines using a modified hpaii tiny fragment enrichment by ligation mediated PCR tagged sequencing protocol

Battachariyya, S., Tytarenko, R., Heuck, C., Greally, J. M. & Verma, A. K., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 167-177 11 p. (Methods in Molecular Biology; vol. 1792).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The HELP-based DNA methylation assays

Greally, J. M., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1708. p. 191-207 17 p. (Methods in Molecular Biology; vol. 1708).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2017

FISH analysis of aging-associated aneuploidy in neurons and nonneuronal brain cells

Andriani, G. A. & Montagna, C., 2017, Neuromethods. Humana Press Inc., Vol. 131. p. 271-298 28 p. (Neuromethods; vol. 131).

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Genetics of Human Aging

Cho, M. & Suh, Y., Jan 1 2016, Handbook of the Biology of Aging: Eighth Edition. Elsevier Inc., p. 327-358 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuroepigenomics and Human Disease

Greally, J. M. & Nestler, E. J., Jun 21 2016, Genomics, Circuits, and Pathways in Clinical Neuropsychiatry. Elsevier Inc., p. 73-91 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantification of HIV-1 gag localization within virus producer cells

Porte, A. L. & Kalpana, G. V., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1354. p. 165-174 10 p. (Methods in Molecular Biology; vol. 1354).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

The role of cell autonomous signaling by BMP in endocardial cushion cells in AV valvuloseptal morphogenesis

Sugi, Y., Zhou, B., Inai, K., Mishina, Y. & Burnside, J. L., Jan 1 2016, Etiology and Morphogenesis of Congenital Heart Disease: From Gene Function and Cellular Interaction to Morphology. Springer Japan, p. 171-173 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2015

Rapid mitochondrial DNA isolation method for direct sequencing

Quispe-Tintaya, W., White, R. R., Popov, V. N., Vijg, J. & Maslov, A., Jan 28 2015, Probing Mitochondrial Function. Springer New York, Vol. 1. p. 89-95 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

The 1000 genomes project

Auton, A. & Salcedo, T., Jan 1 2015, Assessing Rare Variation in Complex Traits: Design and Analysis of Genetic Studies. Springer New York, p. 71-85 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations
2013

A brief introduction to tiling microarrays: Principles, concepts, and applications

Lemetre, C. & Zhang, Z. D., Sep 20 2013, Tiling Arrays: Methods and Protocols. Lee, T-L. & Luk, A. C. S. (eds.). p. 3-19 17 p. (Methods in Molecular Biology; vol. 1067).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Myc in stem cell behaviour: Insights from Drosophila

Quinn, L. M., Secombe, J. & Hime, G. R., Jan 1 2013, Transcriptional and Translational Regulation of Stem Cells. Springer New York LLC, p. 269-285 17 p. (Advances in Experimental Medicine and Biology; vol. 786).

Research output: Chapter in Book/Report/Conference proceedingChapter

10 Scopus citations
2012

Analysis of the endocardial-to-mesenchymal transformation of heart valve development by collagen gel culture assay

Xiong, Y., Zhou, B. & Chang, C. P., Feb 1 2012, Cardiovascular Development: Methods and Protocols. Peng, X. & Antonyak, M. (eds.). p. 101-109 9 p. (Methods in Molecular Biology; vol. 843).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Automated computational analysis of genome-wide DNA methylation profiling data from HELP-tagging assays

Jing, Q., McLellan, A., Greally, J. M. & Suzuki, M., Jan 2 2012, Functional Genomics: Methods and Protocols. Kaufmann, M. & Klinger, C. (eds.). p. 79-87 9 p. (Methods in Molecular Biology; vol. 815).

Research output: Chapter in Book/Report/Conference proceedingChapter

10 Scopus citations

Estimating recombination rates from genetic variation in humans

Auton, A. & McVean, G., Apr 30 2012, Evolutionary Genomics: Statistical and Computational Methods, Volume 2. Anisimova, M. & Anisimova, M. (eds.). p. 217-237 21 p. (Methods in Molecular Biology; vol. 856).

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Scopus citations

HELP-Tagging: Tag-Based Genome-Wide Cytosine Methylation Profiling

Suzuki, M. & Greally, J. M., Jan 23 2012, Tag-Based Next Generation Sequencing. Wiley-VCH, p. 299-309 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Biology of KAL1 and its orthologs: Implications for X-linked Kallmann syndrome and the search for novel candidate genes

MacColl, G. S., Quinton, R. & Bülow, H. E., Sep 7 2010, Kallmann Syndrome and Hypogonadotropic Hypogonadism. Quinton, R. (ed.). p. 62-77 16 p. (Frontiers of Hormone Research; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Comparative genomics of aging

Vijg, J., Garcia, A. M., Calder, B. & Dollé, M., Dec 1 2010, The Comparative Biology of Aging. Springer Netherlands, p. 191-200 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Development of targeted therapies for rhabdoid tumors based on the functions of INI1/hSNF5 tumor suppressor

Kalpana, G. V. & Smith, M. E., Dec 1 2010, Molecularly Targeted Therapy for Childhood Cancer. Springer New York, p. 305-330 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Genetics of autism

Abrahams, B. S. & Geschwind, D. H., Jan 1 2010, Vogel and Motulsky's Human Genetics: Problems and Approaches (Fourth Edition). Springer-Verlag Berlin Heidelberg, p. 699-714 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

12 Scopus citations
2009

Genome-wide determination of DNA methylation by Hpa II tiny fragment enrichment by ligation-mediated PCR (HELP) for the study of acute leukemias

Figueroa, M. E., Melnick, A. & Greally, J. M., Dec 1 2009, Leukemia: Methods and Protocols. So, C. W. E. (ed.). p. 395-407 13 p. (Methods in Molecular Biology; vol. 538).

Research output: Chapter in Book/Report/Conference proceedingChapter

29 Scopus citations

Reverse two-hybrid screening to analyze protein-protein interaction of HIV-1 viral and cellular proteins

Das, S. & Kalpana, G. V., Feb 23 2009, HIV Protocols. Prasad, V. R. & Kalpana, G. V. (eds.). p. 271-293 23 p. (Methods in Molecular Biology; vol. 485).

Research output: Chapter in Book/Report/Conference proceedingChapter

10 Scopus citations

The Deiodinase Type 2 (DIO2) Gene and Mental Retardation in Iodine Deficiency

Guo, T. W., Clair, D. S. & He, L., Dec 1 2009, Comprehensive Handbook of Iodine. Elsevier Inc., p. 635-641 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The expanding view of cytosine methylation

Greally, J. M., Jan 1 2009, Epigenomics. Springer Netherlands, p. 69-83 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2007

DNA and gene expression

Vijg, J., Jan 1 2007, Encyclopedia of Gerontology. Elsevier Inc., p. 436-447 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

New Insights into the Role of Tbx1 in the Digeorge Mouse Model

Kochilas, L., Liao, J., Merscher-Gomez, S., Kucherlapati, R., Morrow, B. & Epstein, J. A., Nov 16 2007, Cardiovascular Development and Congenital Malformations: Molecular & Genetic Mechanisms. Blackwell Publishing Ltd, p. 135-136 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2006

Chromosome 22q11.2 rearrangement disorders

Morrow, B. E., Dec 1 2006, Genomic Disorders: The Genomic Basis of Disease. Humana Press, p. 193-206 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The molecular diversity of glycosaminoglycans shapes animal development

Bülow, H. E. & Hobert, O., Nov 24 2006, Annual Review of Cell and Developmental Biology. Schekman, R., Goldstein, L. & Rossant, J. (eds.). p. 375-407 33 p. (Annual Review of Cell and Developmental Biology; vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapter

233 Scopus citations
2005

Sexual Behavior of the Caenorhabditis elegans Male

Emmons, S. W., Dec 1 2005, The Neurobiology of C. elegans. Aamodt, E. (ed.). p. 99-123 25 p. (International Review of Neurobiology; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Scopus citations
2003

Screening for mutations in cancer-predisposition genes

Vijg, J. & Suh, Y., Jan 1 2003, Genetic Predisposition to Cancer, Second Edition. CRC Press, p. 48-60 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations