Anatomy & Structural Biology

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2020

Microscopic methods for analysis of macrophage-induced tunneling nanotubes

Carter, K. P., Segall, J. E. & Cox, D., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 273-279 7 p. (Methods in Molecular Biology; vol. 2108).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

New generations of MS2 variants and MCP fusions to detect single mRNAs in living eukaryotic cells

Pichon, X., Robert, M. C., Bertrand, E., Singer, R. H. & Tutucci, E., 2020, Methods in Molecular Biology. Humana Press Inc., p. 121-144 24 p. (Methods in Molecular Biology; vol. 2166).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optogenetics: Rho GTPases activated by light in living macrophages

Hülsemann, M., Verkhusha, P. V., Guo, P., Miskolci, V., Cox, D. & Hodgson, L., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 281-293 13 p. (Methods in Molecular Biology; vol. 2108).

Research output: Chapter in Book/Report/Conference proceedingChapter

Simultaneous detection of mRNA and protein in S. cerevisiae by single-molecule FISH and immunofluorescence

Tutucci, E. & Singer, R. H., 2020, Methods in Molecular Biology. Humana Press Inc., p. 51-69 19 p. (Methods in Molecular Biology; vol. 2166).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2019

Imaging Single mRNA Molecules in Mammalian Cells Using an Optimized MS2-MCP System

Vera, M., Tutucci, E. & Singer, R. H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 3-20 18 p. (Methods in Molecular Biology; vol. 2038).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2018

Characterization of genetically encoded FRET biosensors for Rho-family GTPases

Donnelly, S. K., Miskolci, V., Garrastegui, A. M., Cox, D. & Hodgson, L., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 87-106 20 p. (Methods in Molecular Biology; vol. 1821).

Research output: Chapter in Book/Report/Conference proceedingChapter

Combining structure–function and single-molecule studies on cytoplasmic dynein

Rao, L., Hülsemann, M. & Gennerich, A., 2018, Methods in Molecular Biology. Humana Press Inc., p. 53-89 37 p. (Methods in Molecular Biology; vol. 1665).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations
2017

Using fluorescence resonance energy transfer-based biosensors to probe Rho GTPase activation during phagocytosis

Miskolci, V., Hodgson, L. & Cox, D., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1519. p. 125-143 19 p. (Methods in Molecular Biology; vol. 1519).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations
2016

Clem methods for studying primary cilia

Macaluso, F. P., Perumal, G., Kolstrup, J. & Satir, P., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1454. p. 193-202 10 p. (Methods in Molecular Biology; vol. 1454).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Intracytoplasmic signaling from cilia in ciliates

Satir, P. & Satir, B. H., May 23 2016, Biocommunication of Ciliates. Springer International Publishing, p. 51-63 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Methods to study interactions between ciliogenesis and autophagy

Satir, B. H. & Pampliega, O., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1454. p. 53-67 15 p. (Methods in Molecular Biology; vol. 1454).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The tumor microenvironment as a metastasis biomarker in breast cancer

Sparano, J. A., Jones, J., Rohan, T. E., Harney, A. S., Condeelis, J. S. & Oktay, M. H., Jan 1 2016, Molecular Pathology of Breast Cancer. Springer International Publishing, p. 153-165 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2013

Analysis of primary cilia in directional cell migration in fibroblasts

Christensen, S. T., Veland, I. R., Schwab, A., Cammer, M. & Satir, P., 2013, Cilia, Part B. Academic Press Inc., p. 45-58 14 p. (Methods in Enzymology; vol. 525).

Research output: Chapter in Book/Report/Conference proceedingChapter

12 Scopus citations

Beta-Barrel Scaffold of Fluorescent Proteins. Folding, Stability and Role in Chromophore Formation.

Stepanenko, O. V., Stepanenko, O. V., Kuznetsova, I. M., Verkhusha, V. V. & Turoverov, K. K., 2013, International Review of Cell and Molecular Biology. Elsevier Inc., p. 221-278 58 p. (International Review of Cell and Molecular Biology; vol. 302).

Research output: Chapter in Book/Report/Conference proceedingChapter

45 Scopus citations

Detecting soluble PolyQ oligomers and investigating their impact on living cells using split-GFP

Lajoie, P. & Snapp, E. L., Sep 3 2013, Tandem Repeats in Genes, Proteins, and Disease: Methods and Protocols. p. 229-239 11 p. (Methods in Molecular Biology; vol. 1017).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

High-resolution live-cell imaging and time-lapse microscopy of invadopodium dynamics and tracking analysis

Sharma, V. P., Entenberg, D. & Condeelis, J., 2013, Adhesion Protein Protocols. Humana Press Inc., p. 343-357 15 p. (Methods in Molecular Biology; vol. 1046).

Research output: Chapter in Book/Report/Conference proceedingChapter

27 Scopus citations

Live cell imaging of RhoGTPase biosensors in tumor cells

Bravo-Cordero, J. J., Moshfegh, Y., Condeelis, J. & Hodgson, L., 2013, Adhesion Protein Protocols. Humana Press Inc., p. 359-370 12 p. (Methods in Molecular Biology; vol. 1046).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations

Photobleaching methods to study golgi complex dynamics in living cells

Snapp, E. L., 2013, Methods in Cell Biology. Academic Press Inc., p. 195-216 22 p. (Methods in Cell Biology; vol. 118).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Protein-ligand interactions of the D-galactose/D-glucose-binding protein as a potential sensing probe of glucose biosensors

Stepanenko, O. V., Stepanenko, O. V., Fonin, A. V., Verkhusha, V. V., Kuznetsova, I. M. & Turoverov, K. K., Nov 27 2013, Spectroscopy of Biological Molecules. Proceedings from the 14th European Conference on the Spectroscopy of Biological Molecules 2011. Marques, M., Batista de Carvalho, L. & Haris, P. (eds.). p. 255-260 6 p. (Advances in Biomedical Spectroscopy; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantitative ratiometric imaging of FRET-biosensors in living cells

Spiering, D., Bravo-Cordero, J. J., Moshfegh, Y., Miskolci, V. & Hodgson, L., 2013, Methods in Cell Biology. Academic Press Inc., p. 593-609 17 p. (Methods in Cell Biology; vol. 114).

Research output: Chapter in Book/Report/Conference proceedingChapter

35 Scopus citations

Structural perturbation of super-folder GFP in the presence of guanidine thiocyanate

Stepanenko, O. V., Stepanenko, O. V., Kuznetsova, I. M., Verkhusha, V. V. & Turoverov, K. K., Nov 27 2013, Spectroscopy of Biological Molecules. Proceedings from the 14th European Conference on the Spectroscopy of Biological Molecules 2011. Marques, M., Batista de Carvalho, L. & Haris, P. (eds.). p. 249-254 6 p. (Advances in Biomedical Spectroscopy; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingChapter

Time-integrated fluorescence cumulant analysis and its application in living cells

Wu, B., Singer, R. H. & Mueller, J. D., 2013, Fluorescence Fluctuation Spectroscopy (FFS), Part A. Academic Press Inc., p. 99-119 21 p. (Methods in Enzymology; vol. 518).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Visualizing in vitro trafficking

Murray, J. W., Apr 2 2013, The Cytoskeleton: Imaging, Isolation, and Interaction. p. 19-39 21 p. (Neuromethods; vol. 79).

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Microenvironments dictating tumor cell dormancy

Bragado, P., Sosa, M. S., Keely, P., Condeelis, J. & Aguirre-Ghiso, J. A., May 9 2012, Minimal Residual Disease and Circulating Tumor Cells in Breast Cancer. Ignatiadis, M., Sotiriou, C. & Pantel, K. (eds.). p. 25-39 15 p. (Recent Results in Cancer Research; vol. 195).

Research output: Chapter in Book/Report/Conference proceedingChapter

76 Scopus citations

Multiplex imaging of Rho family GTPase activities in living cells

Spiering, D. & Hodgson, L., Jan 20 2012, Rho GTPases: Methods and Protocols. Rivero, F. (ed.). p. 215-234 20 p. (Methods in Molecular Biology; vol. 827).

Research output: Chapter in Book/Report/Conference proceedingChapter

21 Scopus citations

The use of fluorescent proteins for intravital imaging of cancer cell invasion

Hulit, J., Kedrin, D., Gligorijevic, B., Entenberg, D., Wyckoff, J., Condeelis, J. & Segall, J. E., Dec 1 2012, In Vivo Cellular Imaging Using Fluorescent Proteins: Methods and Protocols. Hoffman, R. M. (ed.). p. 15-30 16 p. (Methods in Molecular Biology; vol. 872).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations
2011

Probing the force generation and stepping behavior of cytoplasmic dynein

Gennerich, A. & Reck-Peterson, S. L., Oct 24 2011, Single Molecule Analysis: Methods and Protocols. Peterman, E. J. G. & Wuite, G. J. L. (eds.). p. 63-80 18 p. (Methods in Molecular Biology; vol. 783).

Research output: Chapter in Book/Report/Conference proceedingChapter

11 Scopus citations
2010

Actin-based motile processes in tumor cell invasion

Oser, M., Eddy, R. & Condeelis, J., Jan 1 2010, Actin-based Motility: Cellular, Molecular and Physical Aspects. Springer Netherlands, p. 125-164 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2009

Dendritic RNA Transport: Dynamic Spatio-Temporal Control of Neuronal Gene Expression

Dictenberg, J. B. & Singer, R. H., Jan 1 2009, Encyclopedia of Neuroscience. Elsevier Ltd., p. 437-444 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Hepatocyte Basolateral Membrane Organic Anion Transporters

Choi, J. H., Murray, J. W. & Wolkoff, A. W., Oct 6 2009, The Liver: Biology and Pathobiology: Fifth Edition. John Wiley & Sons, Ltd., p. 305-321 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Imaging Cellular Proteins and Structures: Smaller, Brighter, and Faster

Snapp, E., Oct 6 2009, The Liver: Biology and Pathobiology: Fifth Edition. John Wiley & Sons, Ltd., p. 1053-1066 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Motors

Satir, P., Oct 6 2009, The Liver: Biology and Pathobiology: Fifth Edition. John Wiley & Sons, Ltd., p. 45-55 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Multicomponent Machines in RNA Modification: H/ACA Ribonucleoproteins

Grozdanov, P. & Meier, U. T., Jan 1 2009, DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution. CRC Press, p. 450-460 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

RNA in cells

Turris, V. D. & Singer, R. H., Feb 25 2009, Single Molecule Dynamics in Life Science. Wiley-VCH Verlag GmbH & Co. KGaA, p. 171-190 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Chapter 10 The Primary Cilium Coordinates Signaling Pathways in Cell Cycle Control and Migration During Development and Tissue Repair

Christensen, S. T., Pedersen, S. F., Satir, P., Veland, I. R. & Schneider, L., Dec 1 2008, Ciliary Function in Mammalian Development. Yoder, B. (ed.). p. 261-301 41 p. (Current Topics in Developmental Biology; vol. 85).

Research output: Chapter in Book/Report/Conference proceedingChapter

100 Scopus citations

Chapter 27 Cell Biology of mRNA Decay

Grünwald, D., Singer, R. H. & Czaplinski, K., 2008, RNA Turnover in Eukaryotes: Nucleases, Pathways and Anaylsis of mRNA Decay. Maquat, L. & Kiledjian, M. (eds.). p. 553-577 25 p. (Methods in Enzymology; vol. 448).

Research output: Chapter in Book/Report/Conference proceedingChapter

20 Scopus citations

Chapter 3 How Did the Cilium Evolve?

Satir, P., Mitchell, D. R. & Jékely, G., Dec 1 2008, Ciliary Function in Mammalian Development. Yoder, B. (ed.). p. 63-82 20 p. (Current Topics in Developmental Biology; vol. 85).

Research output: Chapter in Book/Report/Conference proceedingChapter

68 Scopus citations

Using the Bacteriophage MS2 Coat Protein-RNA Binding Interaction to Visualize RNA in Living Cells

Chao, J. A., Czaplinski, K. & Singer, R. H., Sep 29 2008, Probes and Tags to Study Biomolecular Function: for Proteins, RNA, and Membranes. Wiley-VCH Verlag GmbH & Co. KGaA, p. 163-174 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations
2007

Dissecting cellular activity from single genes to single mRNAs

Darzacq, X., Singer, R. H. & Shav-Tal, Y., Aug 3 2007, New Frontiers in Ultrasensitive Bioanalysis: Advanced Analytical Chemistry Applications in Nanobiotechnology, Single Molecule Detection, and Single Cell Analysis. Xu, X-H. N. (ed.). p. 29-39 11 p. (Chemical Analysis; vol. 172).

Research output: Chapter in Book/Report/Conference proceedingChapter

Studying and Working with Ribonucleoproteins that Catalyze H/ACA Guided RNA Modification

Meier, U. T., Sep 7 2007, RNA and DNA Editing: Molecular Mechanisms and Their Integration into Biological Systems. John Wiley & Sons, Inc., p. 162-174 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2006

Dissecting Cellular Activity from Single Genes to Single mRNAs

Darzacq, X., Singer, R. H. & Shav-Tal, Y., Aug 24 2006, New Frontiers in Ultrasensitive Bioanalysis: Advanced Analytical Chemistry Applications in Nanobiotechnology, Single Molecule Detection, and Single Cell Analysis. John Wiley and Sons Inc., p. 29-39 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Single cell gene expression profiling: Multiplexed expression fluorescence in situ hybridization: Application to the analysis of cultured cells

Levsky, J. M., Braut, S. A. & Singer, R. H., Dec 1 2006, Cell Biology, Four-Volume Set. Elsevier Inc., Vol. 4. p. 121-126 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2005

Photoregulation of Proteins

Loudwig, S., Bayley, H., Peng, L., Goeldner, M., Condeelis, J. S. & Lawrence, D. S., Oct 27 2005, Dynamic Studies in Biology: Phototriggers, Photoswitches and Caged Biomolecules. Wiley-VCH Verlag GmbH & Co. KGaA, p. 253-340 88 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Scopus citations
2003

RNA Localization and Signal Transduction

Latham, V. & Singer, R. H., Nov 7 2003, Handbook of Cell Signaling. Elsevier Inc., Vol. 3-3. p. 293-297 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations